This is the preprocessing script to prepare the data to run analyses for the project “Anxiety, depression and trauma symptom change during the COVID-19 pandemic: retrospective versus objective assessment” - Young et al (2020)

Script written by K Purves, K Thompson, C Huebel and M Davies. Email: , , ,

#Set up

Clear global environment

Retrieve the current date to use it for file endings to not overwrite files when one exports files

Specify cohort

#Packages Install packages (if they are not available in your version of R)

Load packages

Registered S3 method overwritten by 'pryr':
  method      from
  print.bytes Rcpp
For best results, restart R session and update pander using devtools:: or remotes::install_github('rapporter/pander')
Warning: package 'eeptools' was built under R version 4.0.3
Loading required package: ggplot2

Attaching package: 'ggplot2'
The following objects are masked from 'package:psych':

    %+%, alpha
-- Attaching packages ---------------------------------------------------------- tidyverse 1.3.0 --
v tibble  3.0.1     v dplyr   1.0.0
v tidyr   1.1.0     v stringr 1.4.0
v readr   1.3.1     v forcats 0.5.0
v purrr   0.3.4     
-- Conflicts ------------------------------------------------------------- tidyverse_conflicts() --
x ggplot2::%+%()   masks psych::%+%()
x ggplot2::alpha() masks psych::alpha()
x dplyr::filter()  masks stats::filter()
x dplyr::lag()     masks stats::lag()
x tibble::view()   masks summarytools::view()

Colour palettes

Define colours for plotting this are the standard coping colours

Choose in this chunk which palette to use 04.07.2020 - Default to 2 colour COPING palette

#Add_numeric function Function used to convert character variables into numeric variables.

Data import and merging

Note: GLAD only receives current measures and RAMP questionnaire Note: All COPING surveys are separate surveys

Source data file paths

Demographics

GLAD

Read in data

Select variables

EDGI

Read in data

  [1] "externalDataReference"                                                        
  [2] "startDate"                                                                    
  [3] "endDate"                                                                      
  [4] "demographics.how_old_are_you_now.txt"                                         
  [5] "demographics.what_is_your_current_height"                                     
  [6] "demographics.what_is_your_current_height.1"                                   
  [7] "demographics.what_is_your_current_height.2"                                   
  [8] "demographics.pregnant_current_weight_provide"                                 
  [9] "demographics.pregnant_current_weight_provide.1"                               
 [10] "demographics.pregnant_current_weight_provide.2"                               
 [11] "demographics.pregnant_provide_weighed_weight"                                 
 [12] "demographics.pregnant_provide_weighed_weight.1"                               
 [13] "demographics.pregnant_provide_weighed_weight.2"                               
 [14] "demographics.highest_weight_bmi.txt"                                          
 [15] "demographics.period.txt"                                                      
 [16] "demographics.adult_height_reaching_weighed"                                   
 [17] "demographics.adult_height_reaching_weighed.1"                                 
 [18] "demographics.adult_height_reaching_weighed.2"                                 
 [19] "demographics.adult_height_lowest_weight.txt"                                  
 [20] "demographics.cigarettes_smoke_day.txt"                                        
 [21] "demographics.affects_concerned_work_live"                                     
 [22] "demographics.memory_problem_worse_year"                                       
 [23] "demographics.cups_day.txt"                                                    
 [24] "demographics.university_education_attend_school.txt"                          
 [25] "demographics.smoke_years.txt"                                                 
 [26] "demographics.what_is_your_ethnic_origin"                                      
 [27] "demographics.what_is_your_ethnic_origin.txt"                                  
 [28] "demographics.i_smoke_now"                                                     
 [29] "demographics.i_used_to_smoke"                                                 
 [30] "demographics.i_vape_now"                                                      
 [31] "demographics.i_used_to_vape"                                                  
 [32] "demographics.i_have_never_smokedvaped"                                        
 [33] "demographics.have_you_ever_been_pregnant"                                     
 [34] "demographics.how_would_you_describe_your_hearing"                             
 [35] "demographics.which_hand_do_you_usually_write_with"                            
 [36] "demographics.what_is_your_current_employment_status"                          
 [37] "demographics.what_is_your_current_employment_status.txt"                      
 [38] "demographics.what_is_your_current_maritalrelationship_status"                 
 [39] "demographics.what_is_your_current_maritalrelationship_status.txt"             
 [40] "demographics.british_scottish_english_or_welsh"                               
 [41] "demographics.irish"                                                           
 [42] "demographics.roma_or_irish_traveler"                                          
 [43] "demographics.spanish"                                                         
 [44] "demographics.polish"                                                          
 [45] "demographics.german"                                                          
 [46] "demographics.french"                                                          
 [47] "demographics.italian"                                                         
 [48] "demographics.other_european"                                                  
 [49] "demographics.australian"                                                      
 [50] "demographics.american"                                                        
 [51] "demographics.other"                                                           
 [52] "demographics.other_text.txt"                                                  
 [53] "demographics.prefer_not_to_answer"                                            
 [54] "demographics.white"                                                           
 [55] "demographics.south_asian"                                                     
 [56] "demographics.east_asian"                                                      
 [57] "demographics.black_african"                                                   
 [58] "demographics.black_caribbean"                                                 
 [59] "demographics.south_african"                                                   
 [60] "demographics.arab"                                                            
 [61] "demographics.any_other_mixed_background"                                      
 [62] "demographics.any_other_mixed_background_text.txt"                             
 [63] "demographics.prefer_not_to_answer.1"                                          
 [64] "demographics.caribbean"                                                       
 [65] "demographics.south_african.1"                                                 
 [66] "demographics.kenyan"                                                          
 [67] "demographics.nigerian"                                                        
 [68] "demographics.ghanaian"                                                        
 [69] "demographics.ugandan"                                                         
 [70] "demographics.any_other_black_background"                                      
 [71] "demographics.any_other_black_background_text.txt"                             
 [72] "demographics.prefer_not_to_answer.2"                                          
 [73] "demographics.what_is_your_first_language"                                     
 [74] "demographics.please_select_your_preferred_units_of_measurement"               
 [75] "demographics.pregnant_provide_bmi_weight"                                     
 [76] "demographics.pregnant_provide_weight_highest"                                 
 [77] "demographics.adult_height_lowest_bmi"                                         
 [78] "demographics.do_you_consider_yourself_to_be_transgender"                      
 [79] "demographics.what_is_your_sexual_orientation"                                 
 [80] "demographics.what_is_your_sexual_orientation.txt"                             
 [81] "demographics.how_would_you_describe_your_vision"                              
 [82] "demographics.disability"                                                      
 [83] "demographics.please_tell_us_more_about_your_disability_.txt"                  
 [84] "demographics.college_or_university_degree"                                    
 [85] "demographics.a_levelsas_levels_or_equivalent"                                 
 [86] "demographics.o_levelsgcses_or_equivalent"                                     
 [87] "demographics.cses_or_equivalent"                                              
 [88] "demographics.nvq_or_hnd_or_hnc_or_equivalent"                                 
 [89] "demographics.other_professional_qualifications_e.g._nursing_teaching"         
 [90] "demographics.other_professional_qualifications_e.g._nursing_teaching_text.txt"
 [91] "demographics.none_of_the_above"                                               
 [92] "demographics.have_you_had_your_first_period"                                  
 [93] "demographics.overweight_told_doctor"                                          
 [94] "demographics.young_child_10_years_or_less"                                    
 [95] "demographics.teenager_11_to_19_years"                                         
 [96] "demographics.young_adult_20_to_30_years"                                      
 [97] "demographics.adult_31_to_40_years"                                            
 [98] "demographics.adult_41_to_50_years"                                            
 [99] "demographics.older_adult_51_to_60_years"                                      
[100] "demographics.older_adult_61_to_70_years"                                      
[101] "demographics.older_adult_71_years"                                            
[102] "demographics.do_you_have_a_specific_diet"                                     
[103] "demographics.do_you_have_a_specific_diet.txt"                                 
[104] "demographics.depression"                                                      
[105] "demographics.pregnancy_depression"                                            
[106] "demographics.premenstrual_dysphoric_disorder_pmdd"                            
[107] "demographics.mania_hypomania_bipolar_or_manicdepression"                      
[108] "demographics.anxiety_nerves_or_generalised_anxiety_disorder"                  
[109] "demographics.social_anxiety_or_social_phobia"                                 
[110] "demographics.specific_phobia_e.g._fear_of_flying"                             
[111] "demographics.agoraphobia"                                                     
[112] "demographics.panic_attacks"                                                   
[113] "demographics.panic_disorder"                                                  
[114] "demographics.posttraumatic_stress_disorder_ptsd"                              
[115] "demographics.obsessivecompulsive_disorder_ocd"                                
[116] "demographics.body_dysmorphic_disorder_bdd"                                    
[117] "demographics.obsessive_compulsive_related_disorders"                          
[118] "demographics.none_of_the_above.1"                                             
[119] "demographics.dont_know"                                                       
[120] "demographics.prefer_not_to_answer.3"                                          
[121] "demographics.epilepsy_or_convulsions"                                         
[122] "demographics.migraines"                                                       
[123] "demographics.multiple_sclerosis"                                              
[124] "demographics.parkinsons_disease"                                              
[125] "demographics.brain_tumour"                                                    
[126] "demographics.severe_memory_loss_like_alzheimers"                              
[127] "demographics.none_of_the_above.2"                                             
[128] "demographics.dont_know.1"                                                     
[129] "demographics.prefer_not_to_answer.4"                                          
[130] "demographics.hay_fever"                                                       
[131] "demographics.drug_allergy_if_yes_which_drug"                                  
[132] "demographics.drug_allergy_if_yes_which_drug_text.txt"                         
[133] "demographics.food_allergy_if_yes_which_food"                                  
[134] "demographics.food_allergy_if_yes_which_food_text.txt"                         
[135] "demographics.any_other_allergy_if_yes_which_allergy"                          
[136] "demographics.allergy__text.txt"                                               
[137] "demographics.ankylosing_spondylitis"                                          
[138] "demographics.osteoporosis_or_thin_bones"                                      
[139] "demographics.hypermobility_ehlersdanlos_syndrome"                             
[140] "demographics.osteoarthritis"                                                  
[141] "demographics.rheumatoid_arthritis"                                            
[142] "demographics.other_arthritis"                                                 
[143] "demographics.other_arthritis_text.txt"                                        
[144] "demographics.none_of_the_above.3"                                             
[145] "demographics.prefer_not_to_answer.5"                                          
[146] "demographics.dont_know.2"                                                     
[147] "demographics.asthma"                                                          
[148] "demographics.emphysema_or_chronic_bronchitis"                                 
[149] "demographics.heart_attack_or_angina"                                          
[150] "demographics.high_blood_cholesterol"                                          
[151] "demographics.high_blood_pressure"                                             
[152] "demographics.atrial_fibrillation"                                             
[153] "demographics.stroke"                                                          
[154] "demographics.paroxysmal_tachycardia_sydrome_pots"                             
[155] "demographics.none_of_the_above.4"                                             
[156] "demographics.dont_know.3"                                                     
[157] "demographics.prefer_not_to_answer.6"                                          
[158] "demographics.crohns_disease"                                                  
[159] "demographics.ulcerative_colitis"                                              
[160] "demographics.coeliac_disease"                                                 
[161] "demographics.diabetes_type_1_early_onset"                                     
[162] "demographics.diabetes_type_1_late_onset"                                      
[163] "demographics.diabetes_type_2_late_onset"                                      
[164] "demographics.pain_due_to_diabetes_diabetic_neuropathy"                        
[165] "demographics.polycystic_ovary_syndrome_pcos"                                  
[166] "demographics.none_of_the_above.5"                                             
[167] "demographics.dont_know.4"                                                     
[168] "demographics.prefer_not_to_answer.7"                                          
[169] "demographics.breast_cancer"                                                   
[170] "demographics.lung_cancer"                                                     
[171] "demographics.stomach_cancer"                                                  
[172] "demographics.colon_cancer"                                                    
[173] "demographics.uterus_cancer"                                                   
[174] "demographics.prostate_cancer"                                                 
[175] "demographics.none_of_the_above.6"                                             
[176] "demographics.dont_know.5"                                                     
[177] "demographics.prefer_not_to_answer.8"                                          
[178] "demographics.listed_previously_told_doctor"                                   
[179] "demographics.listed_previously_told_doctor.txt"                               
[180] "demographics.psoriasis"                                                       
[181] "demographics.vitiligo"                                                        
[182] "demographics.eczema"                                                          
[183] "demographics.thyroid_disease_if_yes_please_specify"                           
[184] "demographics.thyroid_disease_if_yes_please_specify_text.txt"                  
[185] "demographics.none_of_the_above.7"                                             
[186] "demographics.dont_know.6"                                                     
[187] "demographics.prefer_not_to_answer.9"                                          
[188] "demographics.pain_due_to_virus_post_herpetic_neuralgia"                       
[189] "demographics.aneurysm_clips_pacemakers_suffered"                              
[190] "demographics.stopped_smoking_years.txt"                                       
[191] "demographics.tobacco_smoke_hours_exposed.txt"                                 
[192] "demographics.middle_wake_night_trouble"                                       
[193] "demographics.diagnosed_personality_disorder"                                  
[194] "demographics.what_is_your_first_language.txt"                                 
[195] "demographics.month"                                                           
[196] "demographics.day"                                                             
[197] "demographics.year"                                                            
[198] "demographics.indian"                                                          
[199] "demographics.pakistani"                                                       
[200] "demographics.chinese"                                                         
[201] "demographics.bangladeshi"                                                     
[202] "demographics.sri_lanka"                                                       
[203] "demographics.iranian"                                                         
[204] "demographics.other_asian_background"                                          
[205] "demographics.other_asian_background_text.txt"                                 
[206] "demographics.prefer_not_to_answer.10"                                         
[207] "demographics.schizophrenia"                                                   
[208] "demographics.psychosis_type_psychotic_illness"                                
[209] "demographics.personality_disorder"                                            
[210] "demographics.autism_spectrum_disorder_asd"                                    
[211] "demographics.attention_deficit_hyperactivity_disorder"                        
[212] "demographics.other.1"                                                         
[213] "demographics.other_text.txt.1"                                                
[214] "demographics.none_of_the_above.8"                                             
[215] "demographics.dont_know.7"                                                     
[216] "demographics.prefer_not_to_answer.11"                                         
[217] "demographics.based_confirm_living_permanent"                                  
[218] "demographics.what_year_did_you_give_up_smoking.txt"                           
[219] "demographics.vaping_sessions_session_minutes"                                 
[220] "demographics.exact_time_stopped_vaping.txt"                                   
[221] "demographics.what_year_did_you_give_up_vaping.txt"                            
[222] "demographics.drink_alcohol_alcohol_consume.txt"                               
[223] "demographics.adopted_step_children_includes"                                  
[224] "demographics.how_many_children_have_you_had"                                  
[225] "demographics.child_1"                                                         
[226] "demographics.child_2"                                                         
[227] "demographics.child_3"                                                         
[228] "demographics.child_4"                                                         
[229] "demographics.child_5"                                                         
[230] "demographics.child_6"                                                         
[231] "demographics.child_7"                                                         
[232] "demographics.child_8"                                                         
[233] "demographics.child_1.1"                                                       
[234] "demographics.child_2.1"                                                       
[235] "demographics.child_3.1"                                                       
[236] "demographics.child_4.1"                                                       
[237] "demographics.child_5.1"                                                       
[238] "demographics.child_6.1"                                                       
[239] "demographics.child_7.1"                                                       
[240] "demographics.child_8.1"                                                       
[241] "demographics.child_1.2"                                                       
[242] "demographics.child_2.2"                                                       
[243] "demographics.child_3.2"                                                       
[244] "demographics.child_4.2"                                                       
[245] "demographics.child_5.2"                                                       
[246] "demographics.child_6.2"                                                       
[247] "demographics.child_7.2"                                                       
[248] "demographics.child_8.2"                                                       
[249] "demographics.text_box_relationship_children.txt"                              
[250] "demographics.child_1.3"                                                       
[251] "demographics.child_2.3"                                                       
[252] "demographics.child_3.3"                                                       
[253] "demographics.child_4.3"                                                       
[254] "demographics.child_5.3"                                                       
[255] "demographics.child_6.3"                                                       
[256] "demographics.child_7.3"                                                       
[257] "demographics.child_8.3"                                                       
[258] "demographics.taking_reason_type_list.txt"                                     
[259] "demographics.nbsp"                                                            
[260] "demographics.nbsp.1"                                                          
[261] "demographics."                                                                
[262] "demographics..1"                                                              
[263] "demographics..2"                                                              
[264] "demographics..3"                                                              
[265] "demographics.nbsp.2"                                                          
[266] "demographics.nbsp.3"                                                          
[267] "demographics..4"                                                              
[268] "demographics..5"                                                              
[269] "demographics..6"                                                              
[270] "demographics..7"                                                              
[271] "demographics.nbsp.4"                                                          
[272] "demographics.nbsp.5"                                                          
[273] "demographics..8"                                                              
[274] "demographics..9"                                                              
[275] "demographics..10"                                                             
[276] "demographics..11"                                                             
[277] "demographics.is_english_your_first_language"                                  
[278] "demographics.text_box_live_children.txt"                                      
[279] "demographics.text_box_ages_sex.txt"                                           
[280] "demographics.select_questionnaire_items_birth"                                
[281] "demographics.depression.1"                                                    
[282] "demographics.depression_during_or_after_pregnancy"                            
[283] "demographics.premenstrual_dysphoric_disorder"                                 
[284] "demographics.mania_hypomania_bipolar_or_manicdepression.1"                    
[285] "demographics.social_anxiety_or_social_phobia.1"                               
[286] "demographics.specific_phobia"                                                 
[287] "demographics.agoraphobia.1"                                                   
[288] "demographics.panic_attacks.1"                                                 
[289] "demographics.panic_disorder.1"                                                
[290] "demographics.posttraumatic_stress_disorder"                                   
[291] "demographics.obsessivecompulsive_disorder"                                    
[292] "demographics.body_dysmorphic_disorder"                                        
[293] "demographics.other_obsessivecompulsive_related_disorders"                     
[294] "demographics.anxiety_nerves_or_generalised_anxiety_disorder.1"                
[295] "demographics.schizophrenia.1"                                                 
[296] "demographics.psychosis_type_psychotic_illness.1"                              
[297] "demographics.autism_spectrum_disorder"                                        
[298] "demographics.attention_deficit_hyperactivity_disorder.1"                      
[299] "demographics.other_qqid401choicetextentryvalue21"                             
[300] "demographics.paranoid_personality_disorder"                                   
[301] "demographics.schizotypal_personality_disorder"                                
[302] "demographics.antisocial_personality_disorder"                                 
[303] "demographics.borderlineemotionally_unstable_personality_disorder"             
[304] "demographics.histrionic_personality_disorder"                                 
[305] "demographics.narcissistic_personality_disorder"                               
[306] "demographics.avoidantanxious_personality_disorder"                            
[307] "demographics.dependent_personality_disorder"                                  
[308] "demographics.obsessivecompulsive_personality_disorder"                        
[309] "demographics.schizoid_personality_disorder"                                   
[310] "demographics.what_gender_do_you_identify_with"                                
[311] "demographics.what_gender_do_you_identify_with.txt"                            

Select variables

[1] 7

GLAD and EDGI

Create data frame

Get summary of combined GLAD and EDI

NBR

Read in data

Select variables

Cohort information

Information on INTERVAL, COMPARE, and STRIDES http://www.donorhealth-btru.nihr.ac.uk/studies/

RAMP

Read in data

Select variables

Demographics variable creation

Gender categories synchronised

RAMP has the correct Gender categories so does not need editing.

Ethnicity recoding

Clean Age variable

Age outlier

Warning: `funs()` is deprecated as of dplyr 0.8.0.
Please use a list of either functions or lambdas: 

  # Simple named list: 
  list(mean = mean, median = median)

  # Auto named with `tibble::lst()`: 
  tibble::lst(mean, median)

  # Using lambdas
  list(~ mean(., trim = .2), ~ median(., na.rm = TRUE))
This warning is displayed once every 8 hours.
Call `lifecycle::last_warnings()` to see where this warning was generated.
Descriptive Statistics  
dem.raw.id$Age  
N: 2304  

                        Age
----------------- ---------
             Mean     27.13
          Std.Dev     10.77
              Min     16.00
               Q1     20.00
           Median     24.00
               Q3     31.00
              Max     73.00
              MAD      7.41
              IQR     11.00
               CV      0.40
         Skewness      1.67
      SE.Skewness      0.05
         Kurtosis      2.68
          N.Valid   2266.00
        Pct.Valid     98.35

Categorise age into groups

In RAMP, age is indicated categorically: 16-18, 19-25, 26-35, 36-45, 46-55, 56-65, 66-70, 71-75, 76-80, 81-85, 86-90, 91-100, 100+ Age categories in GLAD, EDGI and NBR have been created to reflect this

Frequencies  
dem.raw.id$age_category  
Type: Factor  

              Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
----------- ------ --------- -------------- --------- --------------
      16-18    371     16.37          16.37     16.10          16.10
      19-25    955     42.14          58.52     41.45          57.55
      26-35    555     24.49          83.01     24.09          81.64
      36-45    204      9.00          92.01      8.85          90.49
      46-55    111      4.90          96.91      4.82          95.31
      56-65     46      2.03          98.94      2.00          97.31
      66-70     16      0.71          99.65      0.69          98.00
      71-75      8      0.35         100.00      0.35          98.35
       <NA>     38                               1.65         100.00
      Total   2304    100.00         100.00    100.00         100.00

Highest education (prepandemic, GLAD & EDGI)

Proceed along qualifications fields. If field is not blank, take that as highest qual. If field is blank, check next field. If all fields are blank, NA Assumes University degree > A level > NVQ > GCSE/O Level/CSE

Frequencies  
dem.raw.id$highest_education_prepan  
Type: Factor  

                   Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
---------------- ------ --------- -------------- --------- --------------
        GCSE/CSE    292     13.66          13.66     12.67          12.67
             NVQ     67      3.14          16.80      2.91          15.58
        A-levels    722     33.79          50.58     31.34          46.92
      University   1056     49.42         100.00     45.83          92.75
            <NA>    167                               7.25         100.00
           Total   2304    100.00         100.00    100.00         100.00
Check highest education coding

Employment

GLAD

Read in data

Select variables

EDGI

Read in data

 [1] "externalDataReference"                                                      
 [2] "startDate"                                                                  
 [3] "endDate"                                                                    
 [4] "Login ID"                                                                   
 [5] "employment.phd"                                                             
 [6] "employment.masters_degree_or_equivalent"                                    
 [7] "employment.postgraduate_degree_or_equivalent"                               
 [8] "employment.bachelors_degree_or_equivalent"                                  
 [9] "employment.a_levelsas_levels_or_equivalent"                                 
[10] "employment.o_levelsgcses_or_equivalent"                                     
[11] "employment.cses_or_equivalent"                                              
[12] "employment.nvq_or_hnd_or_hnc_or_equivalent"                                 
[13] "employment.other_professional_qualifications_e.g._nursing_teaching"         
[14] "employment.other_professional_qualifications_e.g._nursing_teaching_text.txt"
[15] "employment.none_of_the_above"                                               
[16] "employment.fulltime_employed"                                               
[17] "employment.parttime_employed"                                               
[18] "employment.unemployed"                                                      
[19] "employment.zerohours_contract"                                              
[20] "employment.stayathome_parent_or_carer"                                      
[21] "employment.selfemployed"                                                    
[22] "employment.contract_or_freelance_work"                                      
[23] "employment.small_business_owner"                                            
[24] "employment.receiving_state_income"                                          
[25] "employment.retired"                                                         
[26] "employment.student_gcse_or_a_level"                                         
[27] "employment.student_university"                                              
[28] "employment.my_employment_status_has_not_changed"                            
[29] "employment.became_unemployed"                                               
[30] "employment.reduction_in_hours"                                              
[31] "employment.reduction_in_salary"                                             
[32] "employment.benefits_increased"                                              
[33] "employment.benefits_decreased"                                              
[34] "employment.change_in_duties_or_responsibilities"                            
[35] "employment.became_employed"                                                 
[36] "employment.increased_hours"                                                 
[37] "employment.increased_salary"                                                
[38] "employment.furloughed_or_paid_leave_government_funded"                      
[39] "employment.furloughed_or_paid_leave_company_funded"                         
[40] "employment.paid_leave_furloughed"                                           
[41] "employment.taking_unpaid_leave"                                             
[42] "employment.other"                                                           
[43] "employment.other_text.txt"                                                  
[44] "employment.no_impact"                                                       
[45] "employment.cancelled_exams"                                                 
[46] "employment.change_in_format_of_exams"                                       
[47] "employment.automatic_pass"                                                  
[48] "employment.change_in_deadlines"                                             
[49] "employment.change_in_lesson_delivery"                                       
[50] "employment.past_performance_grade_decided"                                  
[51] "employment.cancelled_classes"                                               
[52] "employment.cannot_complete_degree"                                          
[53] "employment.impact_on_studies_still_unknown"                                 
[54] "employment.other.1"                                                         
[55] "employment.other_text.txt.1"                                                
[56] "employment.complete_home_work"                                              
[57] "employment.are_you_currently_working_from_home"                             
[58] "employment.attend_work_encouraged_work"                                     
[59] "employment.government_work_key_workers"                                     
[60] "employment.government_work_key_workers.txt"                                 
[61] "employment.type_role"                                                       
[62] "employment.type_role.1"                                                     
[63] "employment.type_role.txt"                                                   
[64] "employment.does_your_job_include_caring_for_others"                         
[65] "employment.is_your_job_public_facing_"                                      
[66] "employment.losing_job_due_risk"                                             
[67] "employment.increased_due_job_pandemic"                                      

Select variables

[1] 0

NBR

Read in data

Select variables

RAMP

Read in data

Select variables

Highest education (baseline, GLAD, EDGI, NBR)

Proceed along qualifications fields. If field is not blank, take that as highest qual. If field is blank, check next field. If all fields are blank, NA Assumes University degree > A level > NVQ > GCSE/O Level/CSE

Frequencies  
employment.raw.id$highest_education  
Type: Factor  

                   Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
---------------- ------ --------- -------------- --------- --------------
        GCSE/CSE     73     13.98          13.98     13.70          13.70
             NVQ     18      3.45          17.43      3.38          17.07
        A-levels    166     31.80          49.23     31.14          48.22
      University    265     50.77         100.00     49.72          97.94
            <NA>     11                               2.06         100.00
           Total    533    100.00         100.00    100.00         100.00
Check highest education coding

Highest education (baseline, RAMP)

Check highest education coding for RAMP

Key worker status

Frequencies  
employment.raw.id$key_worker  
Type: Factor  

                      Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
------------------- ------ --------- -------------- --------- --------------
      No key worker    348     65.29          65.29     65.29          65.29
         Key worker    185     34.71         100.00     34.71         100.00
               <NA>      0                               0.00         100.00
              Total    533    100.00         100.00    100.00         100.00

Columns to exclude from add_numeric

mhd

GLAD

EDGI

 [1] "externalDataReference"                             
 [2] "startDate"                                         
 [3] "endDate"                                           
 [4] "mhd.suspected_eating_disorder_diagnosed"           
 [5] "mhd.eating_disorder_received_treatment"            
 [6] "mhd.anorexia_nervosa"                              
 [7] "mhd.atypical_anorexia_nervosa"                     
 [8] "mhd.bulimia_nervosa"                               
 [9] "mhd.atypical_bulimia_nervosa"                      
[10] "mhd.bingeeating_disorder"                          
[11] "mhd.atypical_bingeeating_disorder"                 
[12] "mhd.purging_disorder"                              
[13] "mhd.nighteating_syndrome"                          
[14] "mhd.pica"                                          
[15] "mhd.avoidantrestrictive_food_intake_disorder_arfid"
[16] "mhd.rumination_eating_disorder"                    
[17] "mhd.feeding_eating_disorder"                       
[18] "mhd.other_eating_disorder"                         
[19] "mhd.other_eating_disorder_text.txt"                
[20] "mhd.none_of_the_above"                             
[21] "mhd.dont_know"                                     
[22] "mhd.prefer_not_to_answer"                          
[23] "mhd.people_thought_weigh_weighed"                  
[24] "mhd.anorexia_nervosa.1"                            
[25] "mhd.atypical_anorexia_nervosa.1"                   
[26] "mhd.bulimia_nervosa.1"                             
[27] "mhd.atypical_bulimia_nervosa.1"                    
[28] "mhd.bingeeating_disorder.1"                        
[29] "mhd.atypical_bingeeating_disorder.1"               
[30] "mhd.purging_disorder.1"                            
[31] "mhd.nighteating_syndrome.1"                        
[32] "mhd.pica.1"                                        
[33] "mhd.avoidantrestrictive_food_intake_disorder"      
[34] "mhd.rumination_eating_disorder.1"                  
[35] "mhd.other_eating_disorder.1"                       
[36] "mhd.other_specified_feeding_or_eating_disorder"    
[37] "mhd.anorexia_nervosa.2"                            
[38] "mhd.atypical_anorexia_nervosa.2"                   
[39] "mhd.bulimia_nervosa.2"                             
[40] "mhd.atypical_bulimia_nervosa.2"                    
[41] "mhd.bingeeating_disorder.2"                        
[42] "mhd.atypical_bingeeating_disorder.2"               
[43] "mhd.purging_disorder.2"                            
[44] "mhd.nighteating_syndrome.2"                        
[45] "mhd.pica.2"                                        
[46] "mhd.avoidantrestrictive_food_intake_disorder.1"    
[47] "mhd.rumination_eating_disorder.2"                  
[48] "mhd.other_eating_disorder.2"                       
[49] "mhd.other_specified_feeding_or_eating_disorder.1"  
[1] 7
  [1] "externalDataReference"                                                        
  [2] "startDate"                                                                    
  [3] "endDate"                                                                      
  [4] "demographics.how_old_are_you_now.txt"                                         
  [5] "demographics.what_is_your_current_height"                                     
  [6] "demographics.what_is_your_current_height.1"                                   
  [7] "demographics.what_is_your_current_height.2"                                   
  [8] "demographics.pregnant_current_weight_provide"                                 
  [9] "demographics.pregnant_current_weight_provide.1"                               
 [10] "demographics.pregnant_current_weight_provide.2"                               
 [11] "demographics.pregnant_provide_weighed_weight"                                 
 [12] "demographics.pregnant_provide_weighed_weight.1"                               
 [13] "demographics.pregnant_provide_weighed_weight.2"                               
 [14] "demographics.highest_weight_bmi.txt"                                          
 [15] "demographics.period.txt"                                                      
 [16] "demographics.adult_height_reaching_weighed"                                   
 [17] "demographics.adult_height_reaching_weighed.1"                                 
 [18] "demographics.adult_height_reaching_weighed.2"                                 
 [19] "demographics.adult_height_lowest_weight.txt"                                  
 [20] "demographics.cigarettes_smoke_day.txt"                                        
 [21] "demographics.affects_concerned_work_live"                                     
 [22] "demographics.memory_problem_worse_year"                                       
 [23] "demographics.cups_day.txt"                                                    
 [24] "demographics.university_education_attend_school.txt"                          
 [25] "demographics.smoke_years.txt"                                                 
 [26] "demographics.what_is_your_ethnic_origin"                                      
 [27] "demographics.what_is_your_ethnic_origin.txt"                                  
 [28] "demographics.i_smoke_now"                                                     
 [29] "demographics.i_used_to_smoke"                                                 
 [30] "demographics.i_vape_now"                                                      
 [31] "demographics.i_used_to_vape"                                                  
 [32] "demographics.i_have_never_smokedvaped"                                        
 [33] "demographics.have_you_ever_been_pregnant"                                     
 [34] "demographics.how_would_you_describe_your_hearing"                             
 [35] "demographics.which_hand_do_you_usually_write_with"                            
 [36] "demographics.what_is_your_current_employment_status"                          
 [37] "demographics.what_is_your_current_employment_status.txt"                      
 [38] "demographics.what_is_your_current_maritalrelationship_status"                 
 [39] "demographics.what_is_your_current_maritalrelationship_status.txt"             
 [40] "demographics.british_scottish_english_or_welsh"                               
 [41] "demographics.irish"                                                           
 [42] "demographics.roma_or_irish_traveler"                                          
 [43] "demographics.spanish"                                                         
 [44] "demographics.polish"                                                          
 [45] "demographics.german"                                                          
 [46] "demographics.french"                                                          
 [47] "demographics.italian"                                                         
 [48] "demographics.other_european"                                                  
 [49] "demographics.australian"                                                      
 [50] "demographics.american"                                                        
 [51] "demographics.other"                                                           
 [52] "demographics.other_text.txt"                                                  
 [53] "demographics.prefer_not_to_answer"                                            
 [54] "demographics.white"                                                           
 [55] "demographics.south_asian"                                                     
 [56] "demographics.east_asian"                                                      
 [57] "demographics.black_african"                                                   
 [58] "demographics.black_caribbean"                                                 
 [59] "demographics.south_african"                                                   
 [60] "demographics.arab"                                                            
 [61] "demographics.any_other_mixed_background"                                      
 [62] "demographics.any_other_mixed_background_text.txt"                             
 [63] "demographics.prefer_not_to_answer.1"                                          
 [64] "demographics.caribbean"                                                       
 [65] "demographics.south_african.1"                                                 
 [66] "demographics.kenyan"                                                          
 [67] "demographics.nigerian"                                                        
 [68] "demographics.ghanaian"                                                        
 [69] "demographics.ugandan"                                                         
 [70] "demographics.any_other_black_background"                                      
 [71] "demographics.any_other_black_background_text.txt"                             
 [72] "demographics.prefer_not_to_answer.2"                                          
 [73] "demographics.what_is_your_first_language"                                     
 [74] "demographics.please_select_your_preferred_units_of_measurement"               
 [75] "demographics.pregnant_provide_bmi_weight"                                     
 [76] "demographics.pregnant_provide_weight_highest"                                 
 [77] "demographics.adult_height_lowest_bmi"                                         
 [78] "demographics.do_you_consider_yourself_to_be_transgender"                      
 [79] "demographics.what_is_your_sexual_orientation"                                 
 [80] "demographics.what_is_your_sexual_orientation.txt"                             
 [81] "demographics.how_would_you_describe_your_vision"                              
 [82] "demographics.disability"                                                      
 [83] "demographics.please_tell_us_more_about_your_disability_.txt"                  
 [84] "demographics.college_or_university_degree"                                    
 [85] "demographics.a_levelsas_levels_or_equivalent"                                 
 [86] "demographics.o_levelsgcses_or_equivalent"                                     
 [87] "demographics.cses_or_equivalent"                                              
 [88] "demographics.nvq_or_hnd_or_hnc_or_equivalent"                                 
 [89] "demographics.other_professional_qualifications_e.g._nursing_teaching"         
 [90] "demographics.other_professional_qualifications_e.g._nursing_teaching_text.txt"
 [91] "demographics.none_of_the_above"                                               
 [92] "demographics.have_you_had_your_first_period"                                  
 [93] "demographics.overweight_told_doctor"                                          
 [94] "demographics.young_child_10_years_or_less"                                    
 [95] "demographics.teenager_11_to_19_years"                                         
 [96] "demographics.young_adult_20_to_30_years"                                      
 [97] "demographics.adult_31_to_40_years"                                            
 [98] "demographics.adult_41_to_50_years"                                            
 [99] "demographics.older_adult_51_to_60_years"                                      
[100] "demographics.older_adult_61_to_70_years"                                      
[101] "demographics.older_adult_71_years"                                            
[102] "demographics.do_you_have_a_specific_diet"                                     
[103] "demographics.do_you_have_a_specific_diet.txt"                                 
[104] "demographics.depression"                                                      
[105] "demographics.pregnancy_depression"                                            
[106] "demographics.premenstrual_dysphoric_disorder_pmdd"                            
[107] "demographics.mania_hypomania_bipolar_or_manicdepression"                      
[108] "demographics.anxiety_nerves_or_generalised_anxiety_disorder"                  
[109] "demographics.social_anxiety_or_social_phobia"                                 
[110] "demographics.specific_phobia_e.g._fear_of_flying"                             
[111] "demographics.agoraphobia"                                                     
[112] "demographics.panic_attacks"                                                   
[113] "demographics.panic_disorder"                                                  
[114] "demographics.posttraumatic_stress_disorder_ptsd"                              
[115] "demographics.obsessivecompulsive_disorder_ocd"                                
[116] "demographics.body_dysmorphic_disorder_bdd"                                    
[117] "demographics.obsessive_compulsive_related_disorders"                          
[118] "demographics.none_of_the_above.1"                                             
[119] "demographics.dont_know"                                                       
[120] "demographics.prefer_not_to_answer.3"                                          
[121] "demographics.epilepsy_or_convulsions"                                         
[122] "demographics.migraines"                                                       
[123] "demographics.multiple_sclerosis"                                              
[124] "demographics.parkinsons_disease"                                              
[125] "demographics.brain_tumour"                                                    
[126] "demographics.severe_memory_loss_like_alzheimers"                              
[127] "demographics.none_of_the_above.2"                                             
[128] "demographics.dont_know.1"                                                     
[129] "demographics.prefer_not_to_answer.4"                                          
[130] "demographics.hay_fever"                                                       
[131] "demographics.drug_allergy_if_yes_which_drug"                                  
[132] "demographics.drug_allergy_if_yes_which_drug_text.txt"                         
[133] "demographics.food_allergy_if_yes_which_food"                                  
[134] "demographics.food_allergy_if_yes_which_food_text.txt"                         
[135] "demographics.any_other_allergy_if_yes_which_allergy"                          
[136] "demographics.allergy__text.txt"                                               
[137] "demographics.ankylosing_spondylitis"                                          
[138] "demographics.osteoporosis_or_thin_bones"                                      
[139] "demographics.hypermobility_ehlersdanlos_syndrome"                             
[140] "demographics.osteoarthritis"                                                  
[141] "demographics.rheumatoid_arthritis"                                            
[142] "demographics.other_arthritis"                                                 
[143] "demographics.other_arthritis_text.txt"                                        
[144] "demographics.none_of_the_above.3"                                             
[145] "demographics.prefer_not_to_answer.5"                                          
[146] "demographics.dont_know.2"                                                     
[147] "demographics.asthma"                                                          
[148] "demographics.emphysema_or_chronic_bronchitis"                                 
[149] "demographics.heart_attack_or_angina"                                          
[150] "demographics.high_blood_cholesterol"                                          
[151] "demographics.high_blood_pressure"                                             
[152] "demographics.atrial_fibrillation"                                             
[153] "demographics.stroke"                                                          
[154] "demographics.paroxysmal_tachycardia_sydrome_pots"                             
[155] "demographics.none_of_the_above.4"                                             
[156] "demographics.dont_know.3"                                                     
[157] "demographics.prefer_not_to_answer.6"                                          
[158] "demographics.crohns_disease"                                                  
[159] "demographics.ulcerative_colitis"                                              
[160] "demographics.coeliac_disease"                                                 
[161] "demographics.diabetes_type_1_early_onset"                                     
[162] "demographics.diabetes_type_1_late_onset"                                      
[163] "demographics.diabetes_type_2_late_onset"                                      
[164] "demographics.pain_due_to_diabetes_diabetic_neuropathy"                        
[165] "demographics.polycystic_ovary_syndrome_pcos"                                  
[166] "demographics.none_of_the_above.5"                                             
[167] "demographics.dont_know.4"                                                     
[168] "demographics.prefer_not_to_answer.7"                                          
[169] "demographics.breast_cancer"                                                   
[170] "demographics.lung_cancer"                                                     
[171] "demographics.stomach_cancer"                                                  
[172] "demographics.colon_cancer"                                                    
[173] "demographics.uterus_cancer"                                                   
[174] "demographics.prostate_cancer"                                                 
[175] "demographics.none_of_the_above.6"                                             
[176] "demographics.dont_know.5"                                                     
[177] "demographics.prefer_not_to_answer.8"                                          
[178] "demographics.listed_previously_told_doctor"                                   
[179] "demographics.listed_previously_told_doctor.txt"                               
[180] "demographics.psoriasis"                                                       
[181] "demographics.vitiligo"                                                        
[182] "demographics.eczema"                                                          
[183] "demographics.thyroid_disease_if_yes_please_specify"                           
[184] "demographics.thyroid_disease_if_yes_please_specify_text.txt"                  
[185] "demographics.none_of_the_above.7"                                             
[186] "demographics.dont_know.6"                                                     
[187] "demographics.prefer_not_to_answer.9"                                          
[188] "demographics.pain_due_to_virus_post_herpetic_neuralgia"                       
[189] "demographics.aneurysm_clips_pacemakers_suffered"                              
[190] "demographics.stopped_smoking_years.txt"                                       
[191] "demographics.tobacco_smoke_hours_exposed.txt"                                 
[192] "demographics.middle_wake_night_trouble"                                       
[193] "demographics.diagnosed_personality_disorder"                                  
[194] "demographics.what_is_your_first_language.txt"                                 
[195] "demographics.month"                                                           
[196] "demographics.day"                                                             
[197] "demographics.year"                                                            
[198] "demographics.indian"                                                          
[199] "demographics.pakistani"                                                       
[200] "demographics.chinese"                                                         
[201] "demographics.bangladeshi"                                                     
[202] "demographics.sri_lanka"                                                       
[203] "demographics.iranian"                                                         
[204] "demographics.other_asian_background"                                          
[205] "demographics.other_asian_background_text.txt"                                 
[206] "demographics.prefer_not_to_answer.10"                                         
[207] "demographics.schizophrenia"                                                   
[208] "demographics.psychosis_type_psychotic_illness"                                
[209] "demographics.personality_disorder"                                            
[210] "demographics.autism_spectrum_disorder_asd"                                    
[211] "demographics.attention_deficit_hyperactivity_disorder"                        
[212] "demographics.other.1"                                                         
[213] "demographics.other_text.txt.1"                                                
[214] "demographics.none_of_the_above.8"                                             
[215] "demographics.dont_know.7"                                                     
[216] "demographics.prefer_not_to_answer.11"                                         
[217] "demographics.based_confirm_living_permanent"                                  
[218] "demographics.what_year_did_you_give_up_smoking.txt"                           
[219] "demographics.vaping_sessions_session_minutes"                                 
[220] "demographics.exact_time_stopped_vaping.txt"                                   
[221] "demographics.what_year_did_you_give_up_vaping.txt"                            
[222] "demographics.drink_alcohol_alcohol_consume.txt"                               
[223] "demographics.adopted_step_children_includes"                                  
[224] "demographics.how_many_children_have_you_had"                                  
[225] "demographics.child_1"                                                         
[226] "demographics.child_2"                                                         
[227] "demographics.child_3"                                                         
[228] "demographics.child_4"                                                         
[229] "demographics.child_5"                                                         
[230] "demographics.child_6"                                                         
[231] "demographics.child_7"                                                         
[232] "demographics.child_8"                                                         
[233] "demographics.child_1.1"                                                       
[234] "demographics.child_2.1"                                                       
[235] "demographics.child_3.1"                                                       
[236] "demographics.child_4.1"                                                       
[237] "demographics.child_5.1"                                                       
[238] "demographics.child_6.1"                                                       
[239] "demographics.child_7.1"                                                       
[240] "demographics.child_8.1"                                                       
[241] "demographics.child_1.2"                                                       
[242] "demographics.child_2.2"                                                       
[243] "demographics.child_3.2"                                                       
[244] "demographics.child_4.2"                                                       
[245] "demographics.child_5.2"                                                       
[246] "demographics.child_6.2"                                                       
[247] "demographics.child_7.2"                                                       
[248] "demographics.child_8.2"                                                       
[249] "demographics.text_box_relationship_children.txt"                              
[250] "demographics.child_1.3"                                                       
[251] "demographics.child_2.3"                                                       
[252] "demographics.child_3.3"                                                       
[253] "demographics.child_4.3"                                                       
[254] "demographics.child_5.3"                                                       
[255] "demographics.child_6.3"                                                       
[256] "demographics.child_7.3"                                                       
[257] "demographics.child_8.3"                                                       
[258] "demographics.taking_reason_type_list.txt"                                     
[259] "demographics.nbsp"                                                            
[260] "demographics.nbsp.1"                                                          
[261] "demographics."                                                                
[262] "demographics..1"                                                              
[263] "demographics..2"                                                              
[264] "demographics..3"                                                              
[265] "demographics.nbsp.2"                                                          
[266] "demographics.nbsp.3"                                                          
[267] "demographics..4"                                                              
[268] "demographics..5"                                                              
[269] "demographics..6"                                                              
[270] "demographics..7"                                                              
[271] "demographics.nbsp.4"                                                          
[272] "demographics.nbsp.5"                                                          
[273] "demographics..8"                                                              
[274] "demographics..9"                                                              
[275] "demographics..10"                                                             
[276] "demographics..11"                                                             
[277] "demographics.is_english_your_first_language"                                  
[278] "demographics.text_box_live_children.txt"                                      
[279] "demographics.text_box_ages_sex.txt"                                           
[280] "demographics.select_questionnaire_items_birth"                                
[281] "demographics.depression.1"                                                    
[282] "demographics.depression_during_or_after_pregnancy"                            
[283] "demographics.premenstrual_dysphoric_disorder"                                 
[284] "demographics.mania_hypomania_bipolar_or_manicdepression.1"                    
[285] "demographics.social_anxiety_or_social_phobia.1"                               
[286] "demographics.specific_phobia"                                                 
[287] "demographics.agoraphobia.1"                                                   
[288] "demographics.panic_attacks.1"                                                 
[289] "demographics.panic_disorder.1"                                                
[290] "demographics.posttraumatic_stress_disorder"                                   
[291] "demographics.obsessivecompulsive_disorder"                                    
[292] "demographics.body_dysmorphic_disorder"                                        
[293] "demographics.other_obsessivecompulsive_related_disorders"                     
[294] "demographics.anxiety_nerves_or_generalised_anxiety_disorder.1"                
[295] "demographics.schizophrenia.1"                                                 
[296] "demographics.psychosis_type_psychotic_illness.1"                              
[297] "demographics.autism_spectrum_disorder"                                        
[298] "demographics.attention_deficit_hyperactivity_disorder.1"                      
[299] "demographics.other_qqid401choicetextentryvalue21"                             
[300] "demographics.paranoid_personality_disorder"                                   
[301] "demographics.schizotypal_personality_disorder"                                
[302] "demographics.antisocial_personality_disorder"                                 
[303] "demographics.borderlineemotionally_unstable_personality_disorder"             
[304] "demographics.histrionic_personality_disorder"                                 
[305] "demographics.narcissistic_personality_disorder"                               
[306] "demographics.avoidantanxious_personality_disorder"                            
[307] "demographics.dependent_personality_disorder"                                  
[308] "demographics.obsessivecompulsive_personality_disorder"                        
[309] "demographics.schizoid_personality_disorder"                                   
[310] "demographics.what_gender_do_you_identify_with"                                
[311] "demographics.what_gender_do_you_identify_with.txt"                            
[1] 7
 [1] "Sample"                                                    
 [2] "ID"                                                        
 [3] "mhd.anorexia_nervosa"                                      
 [4] "mhd.atypical_anorexia_nervosa"                             
 [5] "mhd.bulimia_nervosa"                                       
 [6] "mhd.atypical_bulimia_nervosa"                              
 [7] "mhd.bingeeating_disorder"                                  
 [8] "mhd.atypical_bingeeating_disorder"                         
 [9] "mhd.other_eating_disorder"                                 
[10] "mhd.none_of_the_above_eating_disorder"                     
[11] "mhd.dont_know_eating_disorder"                             
[12] "mhd.prefer_not_to_answer_eating_disorder"                  
[13] "mhd.anorexia_nervosa_numeric"                              
[14] "mhd.atypical_anorexia_nervosa_numeric"                     
[15] "mhd.bulimia_nervosa_numeric"                               
[16] "mhd.atypical_bulimia_nervosa_numeric"                      
[17] "mhd.bingeeating_disorder_numeric"                          
[18] "mhd.atypical_bingeeating_disorder_numeric"                 
[19] "mhd.other_eating_disorder_numeric"                         
[20] "mhd.none_of_the_above_eating_disorder_numeric"             
[21] "mhd.dont_know_eating_disorder_numeric"                     
[22] "mhd.prefer_not_to_answer_eating_disorder_numeric"          
[23] "mhd.depression"                                            
[24] "mhd.pregnancy_depression"                                  
[25] "mhd.premenstrual_dysphoric_disorder_pmdd"                  
[26] "mhd.anxiety_nerves_or_generalised_anxiety_disorder"        
[27] "mhd.social_anxiety_or_social_phobia"                       
[28] "mhd.specific_phobia_e.g._phobia_of_flying"                 
[29] "mhd.agoraphobia"                                           
[30] "mhd.panic_disorder"                                        
[31] "mhd.panic_attacks"                                         
[32] "mhd.obsessivecompulsive_disorder_ocd"                      
[33] "mhd.obsessive_compulsive_related_disorders"                
[34] "mhd.body_dysmorphic_disorder_bdd"                          
[35] "mhd.mania_hypomania_bipolar_or_manicdepression"            
[36] "mhd.schizophrenia"                                         
[37] "mhd.type_psychosis_psychotic_illness"                      
[38] "mhd.personality_disorder_diagnosed"                        
[39] "mhd.posttraumatic_stress_disorder_ptsd"                    
[40] "mhd.autism_aspergers_or_autistic_spectrum_disorder"        
[41] "mhd.personality_disorder"                                  
[42] "mhd.attention_deficit_hyperactivity_disorder"              
[43] "mhd.none_of_the_above"                                     
[44] "mhd.dont_know"                                             
[45] "mhd.prefer_not_to_answer"                                  
[46] "mhd.none_of_the_above.1"                                   
[47] "mhd.dont_know.1"                                           
[48] "mhd.prefer_not_to_answer.1"                                
[49] "mhd.other_please_tell_us_more"                             
[50] "mhd.schizoaffective_disorder"                              
[51] "mhd.depression_numeric"                                    
[52] "mhd.pregnancy_depression_numeric"                          
[53] "mhd.premenstrual_dysphoric_disorder_pmdd_numeric"          
[54] "mhd.anxiety_nerves_or_generalised_anxiety_disorder_numeric"
[55] "mhd.social_anxiety_or_social_phobia_numeric"               
[56] "mhd.specific_phobia_e.g._phobia_of_flying_numeric"         
[57] "mhd.agoraphobia_numeric"                                   
[58] "mhd.panic_disorder_numeric"                                
[59] "mhd.panic_attacks_numeric"                                 
[60] "mhd.obsessivecompulsive_disorder_ocd_numeric"              
[61] "mhd.obsessive_compulsive_related_disorders_numeric"        
[62] "mhd.body_dysmorphic_disorder_bdd_numeric"                  
[63] "mhd.mania_hypomania_bipolar_or_manicdepression_numeric"    
[64] "mhd.schizophrenia_numeric"                                 
[65] "mhd.type_psychosis_psychotic_illness_numeric"              
[66] "mhd.personality_disorder_diagnosed_numeric"                
[67] "mhd.posttraumatic_stress_disorder_ptsd_numeric"            
[68] "mhd.autism_aspergers_or_autistic_spectrum_disorder_numeric"
[69] "mhd.personality_disorder_numeric"                          
[70] "mhd.attention_deficit_hyperactivity_disorder_numeric"      
[71] "mhd.none_of_the_above_numeric"                             
[72] "mhd.dont_know_numeric"                                     
[73] "mhd.prefer_not_to_answer_numeric"                          
[74] "mhd.none_of_the_above.1_numeric"                           
[75] "mhd.dont_know.1_numeric"                                   
[76] "mhd.prefer_not_to_answer.1_numeric"                        
[77] "mhd.other_please_tell_us_more_numeric"                     
[78] "mhd.schizoaffective_disorder_numeric"                      

NBR

RAMP

Grouping mental health disorders

#Disorder groupings - from COPING/RAMP analysis minutes 1. Depressive disorder group: major depression, antenatal/postnatal depression, premenstrual depression. The logic for this has been double checked for males - KT/MD. 2. Anxiety group: generalised anxiety, social anxiety, specific phobia, agoraphobia, panic_disorder, panic_attacks. 3. Agoraphobia and panic_disorder group: panic_disorder, agoraphobia, panic_attacks. 4. Eating disorders group: anorexianervosa, atypical anorexia nervosa, bulimia nervosa, overeating or bingeeating. 5. Obsessive complusive disorders: obsessive compulaive disorder, obsessive compulsive related disorders. 6. Psychotic disorders: schizophrenia, schizoaffective disorder, general psychosis or psychotic illness. 7. Personality disorders: cluster A, cluster B, cluster C 8. Control group: no diagnosed disorders.

Disorders of interest MDD and other depressive disorders Anxiety, nerves or generalised anxiety disorder Social anxiety Specific phobia Agoraphobia/panic disorder/panic attacks OCD (& OCD-related disorders e.g., skin picking?) PTSD Bipolar Eating disorders (Anorexia, BE-type EDs) Personality disorder: Clusters A, B, and C No-diagnosis group

Analysis plan of Disorders: KY and KP analysis plan 1. Basic: any anxiety or unipolar depressive disorder vs. those with no prior diagnosis 2. Specific: breakdown by type of prior anxiety (& related) disorder diagnosis 3. Breakdown by COVID or not (using COVIDENCE/Zoe algorithm)

Depressive disorders

Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercion
Frequencies  
mhd.raw.id$depressive_disorders  
Type: Factor  

                               Freq   % Valid   % Total
---------------------------- ------ --------- ---------
      No depressive disorder    740     34.15     32.12
         Depressive disorder   1427     65.85     61.94
                        <NA>    137                5.95
                       Total   2304    100.00    100.00

Anxiety disorders

Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercion
Frequencies  
mhd.raw.id$anxiety_disorders  
Type: Factor  

                            Freq   % Valid   % Total
------------------------- ------ --------- ---------
      No anxiety disorder    834     38.49     36.20
         Anxiety disorder   1333     61.51     57.86
                     <NA>    137                5.95
                    Total   2304    100.00    100.00

Agoraphobia and panic disorder group

Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercion
Frequencies  
mhd.raw.id$agoraphobia_panic_disorder  
Type: Factor  

                                      Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
----------------------------------- ------ --------- -------------- --------- --------------
      No agoraphobia/panic disorder   1589     73.33          73.33     68.97          68.97
         Agoraphobia/panic disorder    578     26.67         100.00     25.09          94.05
                               <NA>    137                               5.95         100.00
                              Total   2304    100.00         100.00    100.00         100.00

Depression and anxiety comorbidity

Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercion
Frequencies  
mhd.raw.id$depression_and_anxiety  
Type: Factor  

                                          Freq   % Valid   % Total
--------------------------------------- ------ --------- ---------
      No depressive or anxiety disorder    513     23.67     22.27
        Depressive and anxiety disorder   1106     51.04     48.00
               Only depressive disorder    321     14.81     13.93
                  Only anxiety disorder    227     10.48      9.85
                                   <NA>    137                5.95
                                  Total   2304    100.00    100.00

Eating disorders

There is routing questionnaire if participants have been diagnosed with an eating disorder and afterwards they get asked the specific disorders. Therefore, mhd.suspected_eating_disorder_diagnosed_numeric needs to be recoded as 0 otherwise they would be NAs.

For EDGI does not include other eating disorders, such as purging disorder, rumination disorder, ARFID, or Pica

Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercion
Frequencies  
mhd.raw.id$eating_disorders  
Type: Factor  

                           Freq   % Valid   % Total
------------------------ ------ --------- ---------
      No eating disorder    408     19.19     17.71
         Eating disorder   1718     80.81     74.57
                    <NA>    178                7.73
                   Total   2304    100.00    100.00

Eating disorders with binge eating vs eating disorders without Caveat: Anorexia nervosa can have binge eating as well. Therefore, this would need an additional variable from the ED100K

Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercion
Frequencies  
mhd.raw.id$restricting_vs_binge_eating_eating_disorders  
Type: Factor  

                                          Freq   % Valid   % Total
--------------------------------------- ------ --------- ---------
                     No eating disorder    408     19.19     17.71
                       Anorexia nervosa   1404     66.04     60.94
      Eating disorder with binge eating    314     14.77     13.63
                                   <NA>    178                7.73
                                  Total   2304    100.00    100.00

Obsessive compulsive disorders

Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercion
Frequencies  
mhd.raw.id$obsessive_compulsive_disorders  
Type: Factor  

                                         Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
-------------------------------------- ------ --------- -------------- --------- --------------
      No obsessive compulsive disorder   1565     72.22          72.22     67.93          67.93
         Obsessive compulsive disorder    602     27.78         100.00     26.13          94.05
                                  <NA>    137                               5.95         100.00
                                 Total   2304    100.00         100.00    100.00         100.00

Psychotic disorders

“mhd.schizophrenia_numeric”
“mhd.schizoaffective_disorder_numeric”
“mhd.type_psychosis_psychotic_illness_numeric”

Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercion
Frequencies  
mhd.raw.id$psychotic_disorders  
Type: Factor  

                              Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
--------------------------- ------ --------- -------------- --------- --------------
      No psychotic disorder   2095     97.67          97.67     90.93          90.93
         Psychotic disorder     50      2.33         100.00      2.17          93.10
                       <NA>    159                               6.90         100.00
                      Total   2304    100.00         100.00    100.00         100.00

Overlap between self-report schizophrenia and bipolar disorder +++CH: Check overlap between schizophrenia group and bipolar disorder ++KT: Only 63 with comorbid self-report bipolar disorder and schizophrenia. More likely to have shared symptoms, less likely to have confirmed diagnoses of both. Could be too severe to be in GLAD?

Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercion
Frequencies  
mhd.raw.id$bipolar_and_schizophrenia  
Type: Factor  

                                         Freq   % Valid   % Total
-------------------------------------- ------ --------- ---------
      No psychotic or bipolar disorder   2022     94.49     87.76
        Psychotic and bipolar disorder     17      0.79      0.74
               Only psychotic disorder     33      1.54      1.43
                 Only bipolar disorder     68      3.18      2.95
                                  <NA>    164                7.12
                                 Total   2304    100.00    100.00

Autism spectrum disorder

Frequencies  
mhd.raw.id$autism_spectrum_disorder  
Type: Factor  

                                    Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
--------------------------------- ------ --------- -------------- --------- --------------
      No autism spectrum disorder   2042     95.20          95.20     88.63          88.63
         Autism spectrum disorder    103      4.80         100.00      4.47          93.10
                             <NA>    159                               6.90         100.00
                            Total   2304    100.00         100.00    100.00         100.00

Personality disorders

++KT: For all cluster coding chunks - have added other clusters as == 0, so that they are not coerced into NAs. Cluster A 1. Paranoid 28 ( 1.0%) 2. Schizoid 15 ( 0.5%) 3. Schizotypal 14 ( 0.5%)

Cluster B 4. Antisocial 24 ( 0.8%) 5. Borderline 2553 (89.4%) 6. Histrionic 7 ( 0.2%) 7. Narcissistic 8 ( 0.3%)

Cluster C 8. Avoidant/anxious 133 ( 4.7%) 9. Dependent 29 ( 1.0%) 10. Obsessive-compulsive

Controls

These individuals have no self report diagnosis of any kind that we measure.

Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercion
Frequencies  
mhd.raw.id$control  
Type: Factor  

                   Freq   % Valid   % Total
---------------- ------ --------- ---------
      No control   2090     96.49     90.71
         Control     76      3.51      3.30
            <NA>    138                5.99
           Total   2304    100.00    100.00

Inspect the participants that do not qualify as double “None of these”

Total disorder count

Frequencies  
mhd.raw.id$disorders_total_count  
Type: Numeric  

              Freq   % Valid   % Total
----------- ------ --------- ---------
          0    144      6.87      6.25
          1    377     17.98     16.36
          2    413     19.69     17.93
          3    534     25.46     23.18
          4    359     17.12     15.58
          5    180      8.58      7.81
          6     57      2.72      2.47
          7     28      1.34      1.22
          8      3      0.14      0.13
          9      2      0.10      0.09
       <NA>    207                8.98
      Total   2304    100.00    100.00

Comorbidity count

Frequencies  
mhd.raw.id$comorbidity_total_count_numeric  
Type: Numeric  

              Freq   % Valid   % Total
----------- ------ --------- ---------
          0    377     19.30     16.36
          1    413     21.15     17.93
          2    534     27.34     23.18
          3    359     18.38     15.58
          4    180      9.22      7.81
          5     57      2.92      2.47
          6     28      1.43      1.22
          7      3      0.15      0.13
          8      2      0.10      0.09
       <NA>    351               15.23
      Total   2304    100.00    100.00
Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercion
Frequencies  
mhd.raw.id$comorbidity_total_count_factor  
Type: Factor  

                             Freq   % Valid   % Total
-------------------------- ------ --------- ---------
            No comorbidity    377     19.30     16.36
        1 comorbid disoder    413     21.15     17.93
       2 comorbid disoders    534     27.34     23.18
      3+ comorbid disoders    629     32.21     27.30
                      <NA>    351               15.23
                     Total   2304    100.00    100.00

Inspection

Create new dataframe with the derived categories

Prepandemic

GAD (prepan)

  [1] "externalDataReference"                                     
  [2] "startDate"                                                 
  [3] "endDate"                                                   
  [4] "gad.regular_physical_exercise_e.g._yoga_running_walking"   
  [5] "gad.none_of_the_above"                                     
  [6] "gad.prefer_not_to_answer"                                  
  [7] "gad.enrolled_psychotherapy_nhs_funded"                     
  [8] "gad.did_you_take_your_medication_as_advised"               
  [9] "gad.did_you_find_the_medication_helpful"                   
 [10] "gad.counselling"                                           
 [11] "gad.mindfulness"                                           
 [12] "gad.relationship_therapy"                                  
 [13] "gad.group_therapy"                                         
 [14] "gad.guided_selfhelp"                                       
 [15] "gad.family_therapy"                                        
 [16] "gad.cognitive_behavioral_therapy_cbt"                      
 [17] "gad.workshops"                                             
 [18] "gad.online_therapy"                                        
 [19] "gad.dont_know"                                             
 [20] "gad.prefer_not_to_answer.1"                                
 [21] "gad.talking_therapy_complete_psychotherapy"                
 [22] "gad.talking_therapy_helpful_find"                          
 [23] "gad.prefer_not_to_answer.2"                                
 [24] "gad.dont_know.1"                                           
 [25] "gad.feeling_nervous_anxious_or_on_edge"                    
 [26] "gad.control_worrying_stop"                                 
 [27] "gad.worrying_too_much_about_different_things"              
 [28] "gad.trouble_relaxing"                                      
 [29] "gad.sit_restless_hard"                                     
 [30] "gad.becoming_easily_annoyed_or_irritable"                  
 [31] "gad.awful_feeling_afraid_happen"                           
 [32] "gad.tense_anxious_felt_worried"                            
 [33] "gad.lot_people_things_situation"                           
 [34] "gad.life_lasting_months_kind"                              
 [35] "gad.life_lasting_estimate_number"                          
 [36] "gad.age_fine_put_years.txt"                                
 [37] "gad.age_fine_put_years.txt.1"                              
 [38] "gad.people_period_worry_stronger"                          
 [39] "gad.did_you_worry_most_days"                               
 [40] "gad.job_security_failing_health"                           
 [41] "gad.stop_worrying_difficult_find"                          
 [42] "gad.mind_worries_time"                                     
 [43] "gad.matter_hard_strong_put"                                
 [44] "gad.control_difficult_find_worry"                          
 [45] "gad.restless"                                              
 [46] "gad.keyed_up_or_on_edge"                                   
 [47] "gad.easily_tired"                                          
 [48] "gad.mind_difficulty_keeping"                               
 [49] "gad.more_irritable_than_usual"                             
 [50] "gad.having_tense_sore_or_aching_muscles"                   
 [51] "gad.often_having_trouble_falling_or_staying_asleep"        
 [52] "gad.professional_problems"                                 
 [53] "gad.medication_prescribed"                                 
 [54] "gad.anxiety_medication_prescribed_week"                    
 [55] "gad.unprescribed_medication_more_than_once"                
 [56] "gad.drugs_or_alcohol_more_than_once"                       
 [57] "gad.structured_wellbeing_activity"                         
 [58] "gad.regular_physical_exercise_e.g._yoga_running_walking.1" 
 [59] "gad.none_of_the_above.1"                                   
 [60] "gad.prefer_not_to_answer.3"                                
 [61] "gad.enrolled_psychotherapy_nhs_funded.1"                   
 [62] "gad.did_you_take_your_medication_as_advised.1"             
 [63] "gad.did_you_find_the_medication_helpful.1"                 
 [64] "gad.counselling.1"                                         
 [65] "gad.group_therapy.1"                                       
 [66] "gad.cognitive_behavioral_therapy_cbt.1"                    
 [67] "gad.mindfulness.1"                                         
 [68] "gad.guided_selfhelp.1"                                     
 [69] "gad.workshops.1"                                           
 [70] "gad.online_therapy.1"                                      
 [71] "gad.family_therapy.1"                                      
 [72] "gad.relationship_therapy.1"                                
 [73] "gad.other"                                                 
 [74] "gad.other_text.txt"                                        
 [75] "gad.never_tried_psychotherapy_or_other_talking_therapies"  
 [76] "gad.dont_know.2"                                           
 [77] "gad.prefer_not_to_answer.4"                                
 [78] "gad.talking_therapy_complete_psychotherapy.1"              
 [79] "gad.including_study_problems_interfere"                    
 [80] "gad.dont_know.3"                                           
 [81] "gad.prefer_not_to_answer.5"                                
 [82] "gad.anxiety_medication_prescribed_week.1"                  
 [83] "gad.regular_physical_exercise_e.g._yoga_running_walking.2" 
 [84] "gad.none_of_the_above.2"                                   
 [85] "gad.prefer_not_to_answer.6"                                
 [86] "gad.did_you_take_your_medication_as_advised.2"             
 [87] "gad.did_you_find_the_medication_helpful.2"                 
 [88] "gad.counselling.2"                                         
 [89] "gad.mindfulness.2"                                         
 [90] "gad.relationship_therapy.2"                                
 [91] "gad.group_therapy.2"                                       
 [92] "gad.guided_selfhelp.2"                                     
 [93] "gad.family_therapy.2"                                      
 [94] "gad.cognitive_behavioral_therapy_cbt.2"                    
 [95] "gad.workshops.2"                                           
 [96] "gad.online_therapy.2"                                      
 [97] "gad.never_tried_psychotherapy_or_other_talking_therapies.1"
 [98] "gad.dont_know.4"                                           
 [99] "gad.prefer_not_to_answer.7"                                
[100] "gad.talking_therapy_complete_psychotherapy.2"              
[101] "gad.talking_therapy_helpful_find.1"                        
[102] "gad.anxiety_medication_prescribed_week.2"                  
[103] "gad.structured_wellbeing_activity.1"                       
[104] "gad.regular_physical_exercise_e.g._yoga_running_walking.3" 
[105] "gad.none_of_the_above.3"                                   
[106] "gad.prefer_not_to_answer.8"                                
[107] "gad.did_you_take_your_medication_as_advised.3"             
[108] "gad.did_you_find_the_medication_helpful.3"                 
[109] "gad.counselling.3"                                         
[110] "gad.mindfulness.3"                                         
[111] "gad.relationship_therapy.3"                                
[112] "gad.group_therapy.3"                                       
[113] "gad.guided_selfhelp.3"                                     
[114] "gad.workshops.3"                                           
[115] "gad.family_therapy.3"                                      
[116] "gad.online_therapy.3"                                      
[117] "gad.never_tried_psychotherapy_or_other_talking_therapies.2"
[118] "gad.dont_know.5"                                           
[119] "gad.prefer_not_to_answer.9"                                
[120] "gad.talking_therapy_complete_psychotherapy.3"              
[121] "gad.talking_therapy_helpful_find.2"                        
[122] "gad.anxiety_medication_prescribed_week.3"                  
[123] "gad.regular_physical_exercise_e.g._yoga_running_walking.4" 
[124] "gad.none_of_the_above.4"                                   
[125] "gad.prefer_not_to_answer.10"                               
[126] "gad.enrolled_psychotherapy_nhs_funded.2"                   
[127] "gad.did_you_take_your_medication_as_advised.4"             
[128] "gad.did_you_find_the_medication_helpful.4"                 
[129] "gad.counselling.4"                                         
[130] "gad.mindfulness.4"                                         
[131] "gad.relationship_therapy.4"                                
[132] "gad.group_therapy.4"                                       
[133] "gad.guided_selfhelp.4"                                     
[134] "gad.family_therapy.4"                                      
[135] "gad.cognitive_behavioral_therapy_cbt.3"                    
[136] "gad.workshops.4"                                           
[137] "gad.online_therapy.4"                                      
[138] "gad.never_tried_psychotherapy_or_other_talking_therapies.3"
[139] "gad.dont_know.6"                                           
[140] "gad.prefer_not_to_answer.11"                               
[141] "gad.anxiety_medication_prescribed_week.4"                  
[142] "gad.structured_wellbeing_activity.2"                       
[143] "gad.none_of_the_above.5"                                   
[144] "gad.prefer_not_to_answer.12"                               
[145] "gad.enrolled_psychotherapy_nhs_funded.3"                   
[146] "gad.did_you_take_your_medication_as_advised.5"             
[147] "gad.did_you_find_the_medication_helpful.5"                 
[148] "gad.counselling.5"                                         
[149] "gad.mindfulness.5"                                         
[150] "gad.relationship_therapy.5"                                
[151] "gad.group_therapy.5"                                       
[152] "gad.guided_selfhelp.5"                                     
[153] "gad.family_therapy.5"                                      
[154] "gad.cognitive_behavioral_therapy_cbt.4"                    
[155] "gad.workshops.5"                                           
[156] "gad.online_therapy.5"                                      
[157] "gad.never_tried_psychotherapy_or_other_talking_therapies.4"
[158] "gad.dont_know.7"                                           
[159] "gad.prefer_not_to_answer.13"                               
[160] "gad.longest_period_continued_kind.3"                       
[161] "gad.life_lasting_month_longer"                             
[162] "gad.life_lasting_month_longer.1"                           
[163] "gad.age_fine_put_years.txt.2"                              
[164] "gad.age_fine_put_years.txt.3"                              
[1] 0

Calculate sum score for GAD-7 Max should be 21.

*Note that scores with missingness will be changed to NA later in the script

Warning in scoreItems(keys = gad.items_key_prepan, items =
prepan.gad.raw.id[gad.items_prepan], : Specifying totals = TRUE without
imputation can lead to serious problems. Are you sure?
Descriptive Statistics  
prepan.gad.raw.id$gad.sum_score_prepan_raw  
N: 126  

                  gad.sum_score_prepan_raw
--------------- --------------------------
           Mean                      10.06
        Std.Dev                       6.11
            Min                       0.00
         Median                      10.00
            Max                      21.00
        N.Valid                     126.00
      Pct.Valid                     100.00

missingness (NAs per person)

prepandemic

Frequencies  
prepan.gad.raw.id$na_per_person_gad_prepan  
Type: Numeric  

              Freq   % Valid   % Total
----------- ------ --------- ---------
          0    123     97.62     97.62
          7      3      2.38      2.38
       <NA>      0                0.00
      Total    126    100.00    100.00
Descriptive Statistics  
prepan.gad.raw.id$gad.sum_score_prepan  
N: 126  

                  gad.sum_score_prepan
--------------- ----------------------
           Mean                  10.30
        Std.Dev                   5.98
            Min                   0.00
         Median                  10.00
            Max                  21.00
        N.Valid                 123.00
      Pct.Valid                  97.62

PCL (prepan)

 [1] "externalDataReference"                            
 [2] "startDate"                                        
 [3] "endDate"                                          
 [4] "pcl.section_asks_skip_button"                     
 [5] "pcl.i_felt_loved"                                 
 [6] "pcl.bruises_left_hard_people"                     
 [7] "pcl.felt_family_hated"                            
 [8] "pcl.someone_molested_me"                          
 [9] "pcl.doctor_needed"                                
[10] "pcl.i_have_been_in_a_confiding_relationship"      
[11] "pcl.partner_violence_partner_deliberately"        
[12] "pcl.partner_extent_felt_worthless"                
[13] "pcl.partner_sexually_interfered_partner"          
[14] "pcl.money_pay_rent_mortgage"                      
[15] "pcl.i_have_been_in_a_confiding_relationship.1"    
[16] "pcl.partner_violence_partner_deliberately.1"      
[17] "pcl.partner_extent_felt_worthless.1"              
[18] "pcl.partner_sexually_interfered_partner.1"        
[19] "pcl.money_pay_rent_mortgage.1"                    
[20] "pcl.sexual_assault_stranger_victim"               
[21] "pcl.mugged_robbed_attacked_victim"                
[22] "pcl.accident_believed_threatening_life"           
[23] "pcl.witnessed_a_sudden_violent_death"             
[24] "pcl.been_diagnosed_with_a_lifethreatening_illness"
[25] "pcl.combat_involved_war_exposed"                  
[26] "pcl.stressful_experience_repeated_images"         
[27] "pcl.stressful_experience_upset_reminded"          
[28] "pcl.stressful_situation_situations_reminded"      
[29] "pcl.cut_people_feeling_distant"                   
[30] "pcl.feeling_irritable_or_having_angry_outbursts"  
[31] "pcl.difficulty_concentrating"                     
[1] 7

Calculate sum score for PCL-6

*Note that scores with missingness will be changed to NA later in the script

Warning in scoreItems(keys = pcl.items_key_prepan, items =
prepan.pcl.raw.id[pcl.items_prepan], : Specifying totals = TRUE without
imputation can lead to serious problems. Are you sure?
Descriptive Statistics  
prepan.pcl.raw.id$pcl.sum_score_prepan_raw  
N: 2304  

                  pcl.sum_score_prepan_raw
--------------- --------------------------
           Mean                      16.57
        Std.Dev                       8.59
            Min                       0.00
         Median                      18.00
            Max                      30.00
        N.Valid                    2304.00
      Pct.Valid                     100.00

Missigness

prepandemic

Frequencies  
prepan.pcl.raw.id$na_per_person_pcl_prepan  
Type: Numeric  

              Freq   % Valid   % Total
----------- ------ --------- ---------
          0   1987     86.24     86.24
          1     15      0.65      0.65
          2      5      0.22      0.22
          3      4      0.17      0.17
          6    293     12.72     12.72
       <NA>      0                0.00
      Total   2304    100.00    100.00
Descriptive Statistics  
prepan.pcl.raw.id$pcl.sum_score_prepan  
N: 2304  

                  pcl.sum_score_prepan
--------------- ----------------------
           Mean                  19.03
        Std.Dev                   6.23
            Min                   6.00
         Median                  19.00
            Max                  30.00
        N.Valid                1987.00
      Pct.Valid                  86.24

PHQ (prepan)

  [1] "externalDataReference"                                    
  [2] "startDate"                                                
  [3] "endDate"                                                  
  [4] "phq.little_interest_or_pleasure_in_doing_things"          
  [5] "phq.feeling_down_depressed_or_hopeless"                   
  [6] "phq.staying_asleep_sleeping_trouble"                      
  [7] "phq.feeling_tired_or_having_little_energy"                
  [8] "phq.poor_appetite_or_overeating"                          
  [9] "phq.feeling_bad_failure_family"                           
 [10] "phq.trouble_concentrating_reading_newspaper"              
 [11] "phq.moving_fidgety_noticed_opposite"                      
 [12] "phq.dead_hurting_thoughts"                                
 [13] "phq.felt_sad_blue_row"                                    
 [14] "phq.lost_interest_give_hobbies"                           
 [15] "phq.day_feelings"                                         
 [16] "phq.did_you_feel_this_way"                                
 [17] "phq.tired_energy_usual_low"                               
 [18] "phq.didyour_weight_change"                                
 [19] "phq.10lbs_weight_change"                                  
 [20] "phq.did_your_sleep_change"                                
 [21] "phq.trouble_falling_asleep"                               
 [22] "phq.waking_too_early"                                     
 [23] "phq.sleeping_too_much"                                    
 [24] "phq.depression_episode_sleeping"                          
 [25] "phq.average_hours_sleep_depression.txt"                   
 [26] "phq.average_hours_sleep_day.txt"                          
 [27] "phq.appetite_change_experience"                           
 [28] "phq.mood_brighten_response_positive"                      
 [29] "phq.arms_legs_experience_heavy"                           
 [30] "phq.forhow_hours_day_heaviness.txt"                       
 [31] "phq.were_you_overly_sensitive_to_interpersonal_rejection" 
 [32] "phq.was_your_mood_worse"                                  
 [33] "phq.trouble_concentrating_lot_usual"                      
 [34] "phq.worthless_good_feel_people"                           
 [35] "phq.death_lot_general"                                    
 [36] "phq.long_altogether_feel"                                 
 [37] "phq.longest_episode_low_mood"                             
 [38] "phq.experienced_depression_low_mood"                      
 [39] "phq.including_study_problems_interfere"                   
 [40] "phq.low_mood_weeks_life"                                  
 [41] "phq.low_mood_weeks_life.1"                                
 [42] "phq.age_fine_put_weeks.txt"                               
 [43] "phq.age_fine_put_weeks.txt.1"                             
 [44] "phq.giving_birth_natal_depression"                        
 [45] "phq.close_relative_significant_illness"                   
 [46] "phq.aprofessional_problems"                               
 [47] "phq.medication_prescribed_weeks"                          
 [48] "phq.unprescribed_medication_more_than_once"               
 [49] "phq.drugs_or_alcohol_more_than_once"                      
 [50] "phq.talking_therapy_psychotherapy"                        
 [51] "phq.structured_wellbeing_activity"                        
 [52] "phq.regular_physical_exercise_e.g._yoga_running_walking"  
 [53] "phq.none_of_the_above"                                    
 [54] "phq.prefer_not_to_answer"                                 
 [55] "phq.enrolled_psychotherapy_nhs_funded"                    
 [56] "phq.did_you_take_your_medication_as_advised"              
 [57] "phq.did_you_find_the_medication_helpful"                  
 [58] "phq.counselling"                                          
 [59] "phq.mindfulness"                                          
 [60] "phq.relationship_therapy"                                 
 [61] "phq.group_therapy"                                        
 [62] "phq.guided_selfhelp"                                      
 [63] "phq.family_therapy"                                       
 [64] "phq.workshops"                                            
 [65] "phq.online_therapy"                                       
 [66] "phq.other"                                                
 [67] "phq.other_text.txt"                                       
 [68] "phq.never_tried_psychotherapy_or_other_talking_therapy"   
 [69] "phq.dont_know"                                            
 [70] "phq.prefer_not_to_answer.1"                               
 [71] "phq.talking_therapy_complete_psychotherapy"               
 [72] "phq.talking_therapy_helpful_find"                         
 [73] "phq.low_mood_begin_long"                                  
 [74] "phq.recent_episode_antidepressantmedications_low"         
 [75] "phq.prescribe_add_augmentation_medications"               
 [76] "phq.have_you_received_electroconvulsive_therapy"          
 [77] "phq.ticked_happened_period_time"                          
 [78] "phq.prefer_not_to_answer.2"                               
 [79] "phq.dont_know.1"                                          
 [80] "phq.hyper_normal_people_thought.1"                        
 [81] "phq.confident_usual_felt.1"                               
 [82] "phq.miss_found_sleep_usual.1"                             
 [83] "phq.faster_spoke_talkative_usual.1"                       
 [84] "phq.slow_head_mind_thoughts.1"                            
 [85] "phq.staying_track_trouble_concentrating.1"                
 [86] "phq....you_had_much_more_energy_than_usual.1"             
 [87] "phq.active_usual_things.1"                                
 [88] "phq.outgoing_middle_night_usual.1"                        
 [89] "phq.interested_sex_usual.1"                               
 [90] "phq.excessive_foolish_risky_unusual.1"                    
 [91] "phq.trouble_family_spending_money.1"                      
 [92] "phq.highquot_irritablequot_quot_longest"                  
 [93] "phq.legal_troubles_arguments_fights"                      
 [94] "phq.bipolar_disorder_depressive_illness"                  
 [95] "phq.blood_relatives_bipolar_disorder"                     
 [96] "phq.mania_high_psychosis_low"                             
 [97] "phq.diagnosis_psychosis_episode_primary"                  
 [98] "phq.talking_therapy_psychotherapy.1"                      
 [99] "phq.regular_physical_exercise_e.g._yoga_running_walking.1"
[100] "phq.none_of_the_above.1"                                  
[101] "phq.prefer_not_to_answer.3"                               
[102] "phq.enrolled_psychotherapy_nhs_funded.1"                  
[103] "phq.did_you_take_your_medication_as_advised.1"            
[104] "phq.did_you_find_the_medication_helpful.1"                
[105] "phq.counselling.1"                                        
[106] "phq.group_therapy.1"                                      
[107] "phq.mindfulness.1"                                        
[108] "phq.guided_selfhelp.1"                                    
[109] "phq.workshops.1"                                          
[110] "phq.online_therapy.1"                                     
[111] "phq.family_therapy.1"                                     
[112] "phq.relationship_therapy.1"                               
[113] "phq.dont_know.2"                                          
[114] "phq.prefer_not_to_answer.4"                               
[115] "phq.talking_therapy_complete_psychotherapy.1"             
[116] "phq.dont_know.3"                                          
[117] "phq.prefer_not_to_answer.5"                               
[118] "phq.medication_prescribed_weeks.1"                        
[119] "phq.drugs_or_alcohol_more_than_once.1"                    
[120] "phq.talking_therapy_psychotherapy.2"                      
[121] "phq.structured_wellbeing_activity.1"                      
[122] "phq.regular_physical_exercise_e.g._yoga_running_walking.2"
[123] "phq.none_of_the_above.2"                                  
[124] "phq.prefer_not_to_answer.6"                               
[125] "phq.did_you_take_your_medication_as_advised.2"            
[126] "phq.did_you_find_the_medication_helpful.2"                
[127] "phq.counselling.2"                                        
[128] "phq.mindfulness.2"                                        
[129] "phq.relationship_therapy.2"                               
[130] "phq.group_therapy.2"                                      
[131] "phq.guided_selfhelp.2"                                    
[132] "phq.family_therapy.2"                                     
[133] "phq.workshops.2"                                          
[134] "phq.online_therapy.2"                                     
[135] "phq.other.2"                                              
[136] "phq.other_text.txt.1"                                     
[137] "phq.dont_know.4"                                          
[138] "phq.prefer_not_to_answer.7"                               
[139] "phq.talking_therapy_complete_psychotherapy.2"             
[140] "phq.talking_therapy_helpful_find.1"                       
[141] "phq.medication_prescribed_weeks.2"                        
[142] "phq.unprescribed_medication_more_than_once.1"             
[143] "phq.drugs_or_alcohol_more_than_once.2"                    
[144] "phq.talking_therapy_psychotherapy.3"                      
[145] "phq.regular_physical_exercise_e.g._yoga_running_walking.3"
[146] "phq.none_of_the_above.3"                                  
[147] "phq.prefer_not_to_answer.8"                               
[148] "phq.did_you_take_your_medication_as_advised.3"            
[149] "phq.did_you_find_the_medication_helpful.3"                
[150] "phq.counselling.3"                                        
[151] "phq.mindfulness.3"                                        
[152] "phq.relationship_therapy.3"                               
[153] "phq.group_therapy.3"                                      
[154] "phq.guided_selfhelp.3"                                    
[155] "phq.workshops.3"                                          
[156] "phq.family_therapy.3"                                     
[157] "phq.online_therapy.3"                                     
[158] "phq.other.3"                                              
[159] "phq.other_text.txt.2"                                     
[160] "phq.dont_know.5"                                          
[161] "phq.prefer_not_to_answer.9"                               
[162] "phq.talking_therapy_complete_psychotherapy.3"             
[163] "phq.talking_therapy_helpful_find.2"                       
[164] "phq.medication_prescribed_weeks.3"                        
[165] "phq.unprescribed_medication_more_than_once.2"             
[166] "phq.talking_therapy_psychotherapy.4"                      
[167] "phq.regular_physical_exercise_e.g._yoga_running_walking.4"
[168] "phq.none_of_the_above.4"                                  
[169] "phq.prefer_not_to_answer.10"                              
[170] "phq.enrolled_psychotherapy_nhs_funded.2"                  
[171] "phq.did_you_take_your_medication_as_advised.4"            
[172] "phq.did_you_find_the_medication_helpful.4"                
[173] "phq.counselling.4"                                        
[174] "phq.mindfulness.4"                                        
[175] "phq.relationship_therapy.4"                               
[176] "phq.group_therapy.4"                                      
[177] "phq.guided_selfhelp.4"                                    
[178] "phq.family_therapy.4"                                     
[179] "phq.workshops.4"                                          
[180] "phq.online_therapy.4"                                     
[181] "phq.other.4"                                              
[182] "phq.other_text.txt.3"                                     
[183] "phq.dont_know.6"                                          
[184] "phq.prefer_not_to_answer.11"                              
[185] "phq.medication_prescribed_weeks.4"                        
[186] "phq.unprescribed_medication_more_than_once.3"             
[187] "phq.drugs_or_alcohol_more_than_once.3"                    
[188] "phq.talking_therapy_psychotherapy.5"                      
[189] "phq.none_of_the_above.5"                                  
[190] "phq.prefer_not_to_answer.12"                              
[191] "phq.enrolled_psychotherapy_nhs_funded.3"                  
[192] "phq.did_you_take_your_medication_as_advised.5"            
[193] "phq.did_you_find_the_medication_helpful.5"                
[194] "phq.counselling.5"                                        
[195] "phq.mindfulness.5"                                        
[196] "phq.relationship_therapy.5"                               
[197] "phq.group_therapy.5"                                      
[198] "phq.guided_selfhelp.5"                                    
[199] "phq.family_therapy.5"                                     
[200] "phq.workshops.5"                                          
[201] "phq.online_therapy.5"                                     
[202] "phq.other.5"                                              
[203] "phq.other_text.txt.4"                                     
[204] "phq.dont_know.7"                                          
[205] "phq.prefer_not_to_answer.13"                              
[1] 0

Calculate sum score for PHQ-9

*Note that scores with missingness will be changed to NA later in the script

Warning in scoreItems(keys = phq.items_key_prepan, items =
prepan.phq.raw.id[phq.items_prepan], : Specifying totals = TRUE without
imputation can lead to serious problems. Are you sure?
Descriptive Statistics  
prepan.phq.raw.id$phq.sum_score_prepan_raw  
N: 126  

                  phq.sum_score_prepan_raw
--------------- --------------------------
           Mean                      12.17
        Std.Dev                       7.49
            Min                       0.00
         Median                      12.00
            Max                      27.00
        N.Valid                     126.00
      Pct.Valid                     100.00

PHQ missingness (NAs per person)

prepandemic

Frequencies  
prepan.phq.raw.id$na_per_person_phq_prepan  
Type: Numeric  

              Freq   % Valid   % Total
----------- ------ --------- ---------
          0    123     97.62     97.62
          9      3      2.38      2.38
       <NA>      0                0.00
      Total    126    100.00    100.00
Frequencies  
prepan.phq.raw.id$phq.missing_only_suicide_item_prepan  
Type: Numeric  

              Freq   % Valid   % Total
----------- ------ --------- ---------
          0    126    100.00    100.00
       <NA>      0                0.00
      Total    126    100.00    100.00

all times

Descriptive Statistics  
prepan.phq.raw.id$phq.sum_score_prepan  
N: 126  

                  phq.sum_score_prepan
--------------- ----------------------
           Mean                  12.46
        Std.Dev                   7.33
            Min                   0.00
         Median                  12.00
            Max                  27.00
        N.Valid                 123.00
      Pct.Valid                  97.62

+++CH: THINK ABOUT THIS!!!

8 items

Descriptive Statistics  
prepan.phq.raw.id$phq.sum_score_8items_prepan  
N: 126  

                  phq.sum_score_8items_prepan
--------------- -----------------------------
           Mean                         12.17
        Std.Dev                          7.49
            Min                          0.00
         Median                         12.00
            Max                         27.00
        N.Valid                        126.00
      Pct.Valid                        100.00

OCIR (prepan)

 [1] "externalDataReference"                             
 [2] "startDate"                                         
 [3] "endDate"                                           
 [4] "ocir.saved_things"                                 
 [5] "ocir.i_check_things_more_often_than_necessary."    
 [6] "ocir.arranged_properly_objects_upset"              
 [7] "ocir.feel_compelled_count_things.27"               
 [8] "ocir.strangers_touch_touched_difficult.33"         
 [9] "ocir.control_difficult_find_thoughts.30"           
[10] "ocir.i_collect_things_i_dont_need.348"             
[11] "ocir.i_repeatedly_check_doors_windows_drawers_etc."
[12] "ocir.arranged_things_change_upset.45"              
[13] "ocir.repeat_feel_numbers.87"                       
[14] "ocir.clean_simply_wash_feel.9"                     
[15] "ocir.mind_upset_unpleasant_thoughts.11"            
[16] "ocir.afraid_avoid_throwing_things.7"               
[17] "ocir.light_switches_water_taps.7"                  
[18] "ocir.arranged_things.32"                           
[19] "ocir.good_feel_bad_numbers.60"                     
[20] "ocir.hands_longer_wash.23"                         
[21] "ocir.frequently_difficulty_rid_nasty.16"           
[1] 0

Calculate sum score for OCI-R

*Note that scores with missingness will be changed to NA later in the script

Warning in scoreItems(keys = ocir.items_key_prepan, items =
prepan.ocir.raw.id[ocir.items_prepan], : Specifying totals = TRUE without
imputation can lead to serious problems. Are you sure?
Descriptive Statistics  
prepan.ocir.raw.id$ocir.sum_score_prepan_raw  
N: 126  

                  ocir.sum_score_prepan_raw
--------------- ---------------------------
           Mean                       20.67
        Std.Dev                       13.80
            Min                        0.00
         Median                       19.00
            Max                       65.00
        N.Valid                      126.00
      Pct.Valid                      100.00

prepandemic

Frequencies  
prepan.ocir.raw.id$na_per_person_ocir_prepan  
Type: Numeric  

              Freq   % Valid   % Total
----------- ------ --------- ---------
          0    123     97.62     97.62
         18      3      2.38      2.38
       <NA>      0                0.00
      Total    126    100.00    100.00
Descriptive Statistics  
prepan.ocir.raw.id$ocir.sum_score_prepan  
N: 126  

                  ocir.sum_score_prepan
--------------- -----------------------
           Mean                   21.18
        Std.Dev                   13.58
            Min                    0.00
         Median                   19.00
            Max                   65.00
        N.Valid                  123.00
      Pct.Valid                   97.62

COPING GAD-7

GLAD

EDGI

 [1] "externalDataReference"                         
 [2] "startDate"                                     
 [3] "endDate"                                       
 [4] "gad.care_difficult_home_things"                
 [5] "gad.pandemic_feelings_felt"                    
 [6] "gad.feeling_nervous_anxious_or_on_edge"        
 [7] "gad.control_worrying_stop"                     
 [8] "gad.worrying_too_much_about_different_things"  
 [9] "gad.trouble_relaxing"                          
[10] "gad.sit_restless_hard"                         
[11] "gad.becoming_easily_annoyed_or_irritable"      
[12] "gad.feeling_afraid_awful_happen"               
[13] "gad.feeling_nervous_anxious_or_on_edge.1"      
[14] "gad.control_worrying_stop.1"                   
[15] "gad.worrying_too_much_about_different_things.1"
[16] "gad.trouble_relaxing.1"                        
[17] "gad.sit_restless_hard.1"                       
[18] "gad.becoming_easily_annoyed_or_irritable.1"    
[19] "gad.feeling_afraid_awful_happen.1"             
[1] 0

NBR

RAMP

Sum scores

Calculate sum score for GAD-7 retrospective

Warning in scoreItems(keys = gad.items_key_retro, items =
coping.gad.raw.id[gad.items_retro], : Specifying totals = TRUE without
imputation can lead to serious problems. Are you sure?
Descriptive Statistics  
coping.gad.raw.id$gad.sum_score_retro_raw  
N: 533  

                  gad.sum_score_retro_raw
--------------- -------------------------
           Mean                      6.53
        Std.Dev                      5.77
            Min                      0.00
         Median                      6.00
            Max                     21.00
        N.Valid                    533.00
      Pct.Valid                    100.00

Calculate sum score for GAD-7 baseline

Warning in scoreItems(keys = gad.items_key_base, items =
coping.gad.raw.id[gad.items_base], : Specifying totals = TRUE without imputation
can lead to serious problems. Are you sure?
Descriptive Statistics  
coping.gad.raw.id$gad.sum_score_base_raw  
N: 533  

                  gad.sum_score_base_raw
--------------- ------------------------
           Mean                    10.91
        Std.Dev                     6.03
            Min                     0.00
         Median                    11.00
            Max                    21.00
        N.Valid                   533.00
      Pct.Valid                   100.00

Missingness

baseline

Frequencies  
coping.gad.raw.id$na_per_person_gad_base  
Type: Numeric  

              Freq   % Valid   % Total
----------- ------ --------- ---------
          0    532     99.81     99.81
          1      1      0.19      0.19
       <NA>      0                0.00
      Total    533    100.00    100.00
Frequencies  
coping.gad.raw.id$na_per_person_gad_retro  
Type: Numeric  

              Freq   % Valid   % Total
----------- ------ --------- ---------
          0    419     78.61     78.61
          7    114     21.39     21.39
       <NA>      0                0.00
      Total    533    100.00    100.00
Descriptive Statistics  
coping.gad.raw.id$gad.sum_score_base_raw  
N: 533  

                  gad.sum_score_base_raw
--------------- ------------------------
           Mean                    10.91
        Std.Dev                     6.03
            Min                     0.00
         Median                    11.00
            Max                    21.00
        N.Valid                   533.00
      Pct.Valid                   100.00
Descriptive Statistics  
coping.gad.raw.id$gad.sum_score_base  
N: 533  

                  gad.sum_score_base
--------------- --------------------
           Mean                10.92
        Std.Dev                 6.03
            Min                 0.00
         Median                11.00
            Max                21.00
        N.Valid               532.00
      Pct.Valid                99.81
Descriptive Statistics  
coping.gad.raw.id$gad.sum_score_retro_raw  
N: 533  

                  gad.sum_score_retro_raw
--------------- -------------------------
           Mean                      6.53
        Std.Dev                      5.77
            Min                      0.00
         Median                      6.00
            Max                     21.00
        N.Valid                    533.00
      Pct.Valid                    100.00
Descriptive Statistics  
coping.gad.raw.id$gad.sum_score_retro  
N: 533  

                  gad.sum_score_retro
--------------- ---------------------
           Mean                  8.31
        Std.Dev                  5.25
            Min                  0.00
         Median                  7.00
            Max                 21.00
        N.Valid                419.00
      Pct.Valid                 78.61

Inspection

COPING: PCL-6

GLAD

Note: Retro for the PCL does not mean retrospective

EDGI

 [1] "externalDataReference"                            
 [2] "startDate"                                        
 [3] "endDate"                                          
 [4] "pcl.repeated_images_thoughts_past"                
 [5] "pcl.upset_reminded_past_feeling"                  
 [6] "pcl.avoiding_activities_reminded_situations"      
 [7] "pcl.cut_people_feeling_distant"                   
 [8] "pcl.feeling_irritable_or_having_angry_outbursts"  
 [9] "pcl.difficulty_concentrating"                     
[10] "pcl.repeated_images_thoughts_past.1"              
[11] "pcl.upset_reminded_past_feeling.1"                
[12] "pcl.avoiding_activities_reminded_situations.1"    
[13] "pcl.cut_people_feeling_distant.1"                 
[14] "pcl.feeling_irritable_or_having_angry_outbursts.1"
[15] "pcl.difficulty_concentrating.1"                   

Note: Retro for the PCL does not mean retrospective

[1] 0

NBR

Note: Retro for the PCL does not mean retrospective

RAMP

Note: Retro for the PCL does not mean retrospective

Recode RAMP PCL retro scores

 [1] "Sample"                                                       
 [2] "ID"                                                           
 [3] "pcl.stressful_experience_repeated_images_base"                
 [4] "pcl.stressful_experience_upset_reminded_base"                 
 [5] "pcl.stressful_situation_avoiding_activities_base"             
 [6] "pcl.cut_people_feeling_distant_base"                          
 [7] "pcl.feeling_irritable_or_having_angry_outbursts_base"         
 [8] "pcl.difficulty_concentrating_base"                            
 [9] "pcl.stressful_experience_repeated_images_retro"               
[10] "pcl.stressful_experience_upset_reminded_retro"                
[11] "pcl.stressful_situation_avoiding_activities_retro"            
[12] "pcl.cut_people_feeling_distant_retro"                         
[13] "pcl.feeling_irritable_or_having_angry_outbursts_retro"        
[14] "pcl.difficulty_concentrating_retro"                           
[15] "pcl.stressful_experience_repeated_images_base_numeric"        
[16] "pcl.stressful_experience_upset_reminded_base_numeric"         
[17] "pcl.stressful_situation_avoiding_activities_base_numeric"     
[18] "pcl.cut_people_feeling_distant_base_numeric"                  
[19] "pcl.feeling_irritable_or_having_angry_outbursts_base_numeric" 
[20] "pcl.difficulty_concentrating_base_numeric"                    
[21] "pcl.stressful_experience_repeated_images_retro_numeric"       
[22] "pcl.stressful_experience_upset_reminded_retro_numeric"        
[23] "pcl.stressful_situation_avoiding_activities_retro_numeric"    
[24] "pcl.cut_people_feeling_distant_retro_numeric"                 
[25] "pcl.feeling_irritable_or_having_angry_outbursts_retro_numeric"
[26] "pcl.difficulty_concentrating_retro_numeric"                   

Sum scores

Calculate sum score for PCL-6 retro

Warning in scoreItems(keys = pcl.items_key_retro, items =
coping.pcl.raw.id[pcl.items_retro], : Specifying totals = TRUE without
imputation can lead to serious problems. Are you sure?
Descriptive Statistics  
coping.pcl.raw.id$pcl.sum_score_retro_raw  
N: 533  

                  pcl.sum_score_retro_raw
--------------- -------------------------
           Mean                      1.74
        Std.Dev                      1.60
            Min                      0.00
         Median                      2.00
            Max                      6.00
        N.Valid                    533.00
      Pct.Valid                    100.00

Calculate sum score for PCL-6 base The sum scores here will not be accurate if we are using complete cases. Only use sum scores here for complete cases, otherwise the minimum will be 0 where it should be 6.

Warning in scoreItems(keys = pcl.items_key_base, items =
coping.pcl.raw.id[pcl.items_base], : Specifying totals = TRUE without imputation
can lead to serious problems. Are you sure?
Descriptive Statistics  
coping.pcl.raw.id$pcl.sum_score_base_raw  
N: 533  

                  pcl.sum_score_base_raw
--------------- ------------------------
           Mean                    16.98
        Std.Dev                     6.08
            Min                     6.00
         Median                    17.00
            Max                    30.00
        N.Valid                   533.00
      Pct.Valid                   100.00

Missingness

PCL missingness (NAs per person)

baseline

Frequencies  
coping.pcl.raw.id$na_per_person_pcl_base  
Type: Numeric  

              Freq   % Valid   % Total
----------- ------ --------- ---------
          0    530     99.44     99.44
          1      2      0.38      0.38
          3      1      0.19      0.19
       <NA>      0                0.00
      Total    533    100.00    100.00

retrospective

Frequencies  
coping.pcl.raw.id$na_per_person_pcl_retro  
Type: Numeric  

              Freq   % Valid   % Total
----------- ------ --------- ---------
          0    240     45.03     45.03
          1    116     21.76     21.76
          2     52      9.76      9.76
          3     56     10.51     10.51
          4     31      5.82      5.82
          5     24      4.50      4.50
          6     14      2.63      2.63
       <NA>      0                0.00
      Total    533    100.00    100.00
Descriptive Statistics  
coping.pcl.raw.id$pcl.sum_score_base_raw  
N: 533  

                  pcl.sum_score_base_raw
--------------- ------------------------
           Mean                    16.98
        Std.Dev                     6.08
            Min                     6.00
         Median                    17.00
            Max                    30.00
        N.Valid                   533.00
      Pct.Valid                   100.00
Descriptive Statistics  
coping.pcl.raw.id$pcl.sum_score_base  
N: 533  

                  pcl.sum_score_base
--------------- --------------------
           Mean                17.01
        Std.Dev                 6.09
            Min                 6.00
         Median                17.00
            Max                30.00
        N.Valid               530.00
      Pct.Valid                99.44
Descriptive Statistics  
coping.pcl.raw.id$pcl.sum_score_retro_raw  
N: 533  

                  pcl.sum_score_retro_raw
--------------- -------------------------
           Mean                      1.74
        Std.Dev                      1.60
            Min                      0.00
         Median                      2.00
            Max                      6.00
        N.Valid                    533.00
      Pct.Valid                    100.00
Descriptive Statistics  
coping.pcl.raw.id$pcl.sum_score_retro  
N: 533  

                  pcl.sum_score_retro
--------------- ---------------------
           Mean                  2.13
        Std.Dev                  1.79
            Min                  0.00
         Median                  2.00
            Max                  6.00
        N.Valid                240.00
      Pct.Valid                 45.03

Inspection

COPING: PHQ

GLAD

Will need to double check these namings once we have the new cleaned data – KT.

EDGI

 [1] "externalDataReference"                            
 [2] "startDate"                                        
 [3] "endDate"                                          
 [4] "phq.care_difficult_home_things"                   
 [5] "phq.pandemic_feelings_felt"                       
 [6] "phq.little_interest_or_pleasure_in_doing_things"  
 [7] "phq.feeling_down_depressed_or_hopeless"           
 [8] "phq.staying_asleep_sleeping_trouble"              
 [9] "phq.feeling_tired_or_having_little_energy"        
[10] "phq.poor_appetite_or_overeating"                  
[11] "phq.family_feeling_bad_failure"                   
[12] "phq.trouble_concentrating_newspaper_reading"      
[13] "phq.moving_fidgety_opposite_slowly"               
[14] "phq.dead_hurting_thoughts"                        
[15] "phq.little_interest_or_pleasure_in_doing_things.1"
[16] "phq.feeling_down_depressed_or_hopeless.1"         
[17] "phq.staying_asleep_sleeping_trouble.1"            
[18] "phq.feeling_tired_or_having_little_energy.1"      
[19] "phq.poor_appetite_or_overeating.1"                
[20] "phq.family_feeling_bad_failure.1"                 
[21] "phq.trouble_concentrating_newspaper_reading.1"    
[22] "phq.moving_fidgety_opposite_slowly.1"             
[23] "phq.dead_hurting_thoughts.1"                      
[1] 0

NBR

Will need to double check these namings once we have the new cleaned data – KT.

RAMP

Will need to double check these namings once we have the new cleaned data – KT.

Sum scores

Calculate sum score for PHQ-9 retro

Warning in scoreItems(keys = phq.items_key_retro, items =
coping.phq.raw.id[phq.items_retro], : Specifying totals = TRUE without
imputation can lead to serious problems. Are you sure?
Descriptive Statistics  
coping.phq.raw.id$phq.sum_score_retro_raw  
N: 533  

                  phq.sum_score_retro_raw
--------------- -------------------------
           Mean                      8.32
        Std.Dev                      6.82
            Min                      0.00
         Median                      7.00
            Max                     27.00
        N.Valid                    533.00
      Pct.Valid                    100.00

Calculate sum score for PHQ-9 base

Warning in scoreItems(keys = phq.items_key_base, items =
coping.phq.raw.id[phq.items_base], : Specifying totals = TRUE without imputation
can lead to serious problems. Are you sure?
Descriptive Statistics  
coping.phq.raw.id$phq.sum_score_base_raw  
N: 533  

                  phq.sum_score_base_raw
--------------- ------------------------
           Mean                    13.08
        Std.Dev                     6.76
            Min                     0.00
         Median                    12.00
            Max                    27.00
        N.Valid                   533.00
      Pct.Valid                   100.00

Missingness

retrospective

Frequencies  
coping.phq.raw.id$na_per_person_phq_retro  
Type: Numeric  

              Freq   % Valid   % Total
----------- ------ --------- ---------
          0    438     82.18     82.18
          1      2      0.38      0.38
          9     93     17.45     17.45
       <NA>      0                0.00
      Total    533    100.00    100.00
Frequencies  
coping.phq.raw.id$phq.missing_only_suicide_item_retro  
Type: Numeric  

              Freq   % Valid   % Total
----------- ------ --------- ---------
          0    533    100.00    100.00
       <NA>      0                0.00
      Total    533    100.00    100.00

baseline

Frequencies  
coping.phq.raw.id$na_per_person_phq_base  
Type: Numeric  

              Freq   % Valid   % Total
----------- ------ --------- ---------
          0    531     99.62     99.62
          1      1      0.19      0.19
          9      1      0.19      0.19
       <NA>      0                0.00
      Total    533    100.00    100.00

We need to identify those who have all items APART from the suicide ideation item - to still include these individuals.

Frequencies  
coping.phq.raw.id$phq.missing_only_suicide_item_base  
Type: Numeric  

              Freq   % Valid   % Total
----------- ------ --------- ---------
          0    533    100.00    100.00
       <NA>      0                0.00
      Total    533    100.00    100.00
Descriptive Statistics  
coping.phq.raw.id$phq.sum_score_base_raw  
N: 533  

                  phq.sum_score_base_raw
--------------- ------------------------
           Mean                    13.08
        Std.Dev                     6.76
            Min                     0.00
         Median                    12.00
            Max                    27.00
        N.Valid                   533.00
      Pct.Valid                   100.00
Descriptive Statistics  
coping.phq.raw.id$phq.sum_score_base  
N: 533  

                  phq.sum_score_base
--------------- --------------------
           Mean                13.11
        Std.Dev                 6.75
            Min                 0.00
         Median                12.00
            Max                27.00
        N.Valid               531.00
      Pct.Valid                99.62

8 items

Descriptive Statistics  
coping.phq.raw.id$phq.sum_score_8items_base  
N: 533  

                  phq.sum_score_8items_base
--------------- ---------------------------
           Mean                       13.08
        Std.Dev                        6.76
            Min                        0.00
         Median                       12.00
            Max                       27.00
        N.Valid                      533.00
      Pct.Valid                      100.00
Descriptive Statistics  
coping.phq.raw.id$phq.sum_score_retro_raw  
N: 533  

                  phq.sum_score_retro_raw
--------------- -------------------------
           Mean                      8.32
        Std.Dev                      6.82
            Min                      0.00
         Median                      7.00
            Max                     27.00
        N.Valid                    533.00
      Pct.Valid                    100.00
Descriptive Statistics  
coping.phq.raw.id$phq.sum_score_retro  
N: 533  

                  phq.sum_score_retro
--------------- ---------------------
           Mean                 10.10
        Std.Dev                  6.21
            Min                  0.00
         Median                  9.00
            Max                 27.00
        N.Valid                438.00
      Pct.Valid                 82.18

8 items

Descriptive Statistics  
coping.phq.raw.id$phq.sum_score_8items_retro  
N: 533  

                  phq.sum_score_8items_retro
--------------- ----------------------------
           Mean                         8.32
        Std.Dev                         6.82
            Min                         0.00
         Median                         7.00
            Max                        27.00
        N.Valid                       533.00
      Pct.Valid                       100.00

Inspection

COPING: OCI-R

GLAD

*Note that the COPING GLAD OCI-R ID numbers are stored under recipientFirstName (rather than ExternalDataReference)

EDGI

 [1] "externalDataReference"                               
 [2] "startDate"                                           
 [3] "endDate"                                             
 [4] "recipientFirstName"                                  
 [5] "ocir.saved_things"                                   
 [6] "ocir.i_check_things_more_often_than_necessary."      
 [7] "ocir.arranged_properly_objects_upset"                
 [8] "ocir.feel_compelled_count_things"                    
 [9] "ocir.strangers_touch_touched_object"                 
[10] "ocir.control_difficult_thoughts_find"                
[11] "ocir.i_collect_things_i_dont_need."                  
[12] "ocir.i_repeatedly_check_doors_windows_drawers_etc."  
[13] "ocir.arranged_things_change_upset"                   
[14] "ocir.repeat_numbers_feel"                            
[15] "ocir.feel_contaminated_clean_simply"                 
[16] "ocir.mind_upset_unpleasant_thoughts"                 
[17] "ocir.afraid_avoid_throwing_things"                   
[18] "ocir.water_taps_light_switches"                      
[19] "ocir.arranged_things"                                
[20] "ocir.bad_numbers_good_feel"                          
[21] "ocir.longer_hands_wash"                              
[22] "ocir.frequently_rid_difficulty_nasty"                
[23] "ocir.felt_pandemic_feelings"                         
[24] "ocir.saved_things.1"                                 
[25] "ocir.i_check_things_more_often_than_necessary..1"    
[26] "ocir.arranged_properly_objects_upset.1"              
[27] "ocir.feel_compelled_count_things.1"                  
[28] "ocir.strangers_touch_touched_object.1"               
[29] "ocir.control_difficult_thoughts_find.1"              
[30] "ocir.i_collect_things_i_dont_need..1"                
[31] "ocir.i_repeatedly_check_doors_windows_drawers_etc..1"
[32] "ocir.arranged_things_change_upset.1"                 
[33] "ocir.repeat_numbers_feel.1"                          
[34] "ocir.feel_contaminated_clean_simply.1"               
[35] "ocir.mind_upset_unpleasant_thoughts.1"               
[36] "ocir.afraid_avoid_throwing_things.1"                 
[37] "ocir.water_taps_light_switches.1"                    
[38] "ocir.arranged_things.1"                              
[39] "ocir.bad_numbers_good_feel.1"                        
[40] "ocir.longer_hands_wash.1"                            
[41] "ocir.frequently_rid_difficulty_nasty.1"              

*Note that the COPING EDGI OCI-R ID numbers are stored under recipientFirstName (rather than ExternalDataReference)

[1] 3

NBR

*Note that the COPING NBR OCI-R ID numbers are stored under recipientFirstName (rather than ExternalDataReference)

++MD: One NBR ID is being converted to NA by the as.numeric(ID) line of code.

RAMP

*Note that the COPING RAMP OCI-R ID numbers are stored under recipientFirstName (rather than ExternalDataReference)

Sum scores

Calculate sum score for OCI-R retro

Warning in scoreItems(keys = ocir.items_key_retro, items =
coping.ocir.raw.id[ocir.items_retro], : Specifying totals = TRUE without
imputation can lead to serious problems. Are you sure?
Descriptive Statistics  
coping.ocir.raw.id$ocir.sum_score_retro_raw  
N: 359  

                  ocir.sum_score_retro_raw
--------------- --------------------------
           Mean                       9.12
        Std.Dev                      14.42
            Min                       0.00
         Median                       0.00
            Max                      67.00
        N.Valid                     359.00
      Pct.Valid                     100.00

Calculate sum score for OCI-R base

Warning in scoreItems(keys = ocir.items_key_base, items =
coping.ocir.raw.id[ocir.items_base], : Specifying totals = TRUE without
imputation can lead to serious problems. Are you sure?
Descriptive Statistics  
coping.ocir.raw.id$ocir.sum_score_base_raw  
N: 359  

                  ocir.sum_score_base_raw
--------------- -------------------------
           Mean                      4.08
        Std.Dev                      9.61
            Min                      0.00
         Median                      0.00
            Max                     59.00
        N.Valid                    359.00
      Pct.Valid                    100.00

Missingness

retrospective

Frequencies  
coping.ocir.raw.id$na_per_person_ocir_retro  
Type: Numeric  

              Freq   % Valid   % Total
----------- ------ --------- ---------
          0    142     39.55     39.55
         18    217     60.45     60.45
       <NA>      0                0.00
      Total    359    100.00    100.00

baseline

Frequencies  
coping.ocir.raw.id$na_per_person_ocir_base  
Type: Numeric  

              Freq   % Valid   % Total
----------- ------ --------- ---------
          0     83     23.12     23.12
         18    276     76.88     76.88
       <NA>      0                0.00
      Total    359    100.00    100.00
Descriptive Statistics  
coping.ocir.raw.id$ocir.sum_score_base_raw  
N: 359  

                  ocir.sum_score_base_raw
--------------- -------------------------
           Mean                      4.08
        Std.Dev                      9.61
            Min                      0.00
         Median                      0.00
            Max                     59.00
        N.Valid                    359.00
      Pct.Valid                    100.00
Descriptive Statistics  
coping.ocir.raw.id$ocir.sum_score_base  
N: 359  

                  ocir.sum_score_base
--------------- ---------------------
           Mean                 17.64
        Std.Dev                 12.69
            Min                  0.00
         Median                 15.00
            Max                 59.00
        N.Valid                 83.00
      Pct.Valid                 23.12
Descriptive Statistics  
coping.ocir.raw.id$ocir.sum_score_retro_raw  
N: 359  

                  ocir.sum_score_retro_raw
--------------- --------------------------
           Mean                       9.12
        Std.Dev                      14.42
            Min                       0.00
         Median                       0.00
            Max                      67.00
        N.Valid                     359.00
      Pct.Valid                     100.00
Descriptive Statistics  
coping.ocir.raw.id$ocir.sum_score_retro  
N: 359  

                  ocir.sum_score_retro
--------------- ----------------------
           Mean                  23.06
        Std.Dev                  14.30
            Min                   2.00
         Median                  21.00
            Max                  67.00
        N.Valid                 142.00
      Pct.Valid                  39.55

Inspection

Neurological symptoms

ALS (alsfrs)

GLAD

Read in data

Select variables

EDGI

Read in data

 [1] "externalDataReference"                            
 [2] "startDate"                                        
 [3] "endDate"                                          
 [4] "Login ID"                                         
 [5] "alsfrs.limb_weakness_noticed_past"                
 [6] "alsfrs.normal"                                    
 [7] "alsfrs.slow_or_sloppy_all_words_are_legible"      
 [8] "alsfrs.not_all_words_are_legible"                 
 [9] "alsfrs.able_to_grip_pen"                          
[10] "alsfrs.unable_to_grip_pen"                        
[11] "alsfrs.have_you_noticed_any_difficulty_walking"   
[12] "alsfrs.do_you_have_any_difficulty_climbing_stairs"

Select variables

[1] 0

NBR

Read in data

Select variables

RAMP

Read in data

Select variables

Epsworth sleep scale (ess)

GLAD

Read in data

Select variables

EDGI

Read in data

 [1] "externalDataReference"                            
 [2] "startDate"                                        
 [3] "endDate"                                          
 [4] "ess.felt_excessively_sleepy_past"                 
 [5] "ess.sitting_and_reading"                          
 [6] "ess.watching_tv"                                  
 [7] "ess.sitting_inactive_in_a_public_place"           
 [8] "ess.break_passenger_hour_car"                     
 [9] "ess.afternoon_rest_circumstances_lying"           
[10] "ess.sitting_and_talking_to_someone"               
[11] "ess.sitting_quietly_after_a_lunch_without_alcohol"
[12] "ess.car_minutes_stopped_traffic"                  
[13] "ess.insomnia"                                     
[14] "ess.narcolepsy"                                   
[15] "ess.rem_sleep_behaviour_disorder"                 
[16] "ess.restless_legs_syndrome"                       
[17] "ess.sleep_apnea"                                  
[18] "ess.sleep_terrors"                                
[19] "ess.sleepwalking"                                 
[20] "ess.other"                                        
[21] "ess.other_text.txt"                               
[22] "ess.none"                                         

Select variables

[1] 0

NBR

Read in data

Select variables

RAMP

Read in data

Select variables

Migraines (midas)

GLAD

Read in data

Select variables

EDGI

Read in data

 [1] "externalDataReference"               "startDate"                          
 [3] "endDate"                             "Login ID"                           
 [5] "midas.headaches_suffered_past_month" "midas.past_month_days"              
 [7] "midas.past_month_days.1"             "midas.past_month_days.2"            
 [9] "midas.past_month_days.3"             "midas.past_month_days.4"            

Select variables

[1] 0

NBR

Read in data

Select variables

RAMP

Read in data

Select variables

Loss of taste/smell (nmss)

GLAD

Read in data

Select variables

EDGI

Read in data

[1] "externalDataReference"         "startDate"                    
[3] "endDate"                       "Login ID"                     
[5] "nmss.taste_food_ability_smell" "nmss.severe_taste_smell_loss" 

Select variables

[1] 0

NBR

Read in data

Select variables

RAMP

Read in data

Select variables

Non-motor symptoms (nmsw)

GLAD

Read in data

Select variables

EDGI

Read in data

 [1] "externalDataReference"                 
 [2] "startDate"                             
 [3] "endDate"                               
 [4] "Login ID"                              
 [5] "nmsw.drink_problems_choking_difficulty"
 [6] "nmsw.regularly_night_pass_urine"       
 [7] "nmsw.sex_difficult_finding"            
 [8] "nmsw.weak_standing_feeling_light"      
 [9] "nmsw.acting_moving_sleep_talking"      
[10] "nmsw.double_vision"                    

Select variables

[1] 0

NBR

Read in data

Select variables

RAMP

Read in data

Select variables

Tinnitus

GLAD

Read in data

Select variables

EDGI

Read in data

[1] "externalDataReference"               "startDate"                          
[3] "endDate"                             "Login ID"                           
[5] "tinnitus.ears_noises_minutes_head"   "tinnitus.ears_noises_minutes_head.1"
[7] "tinnitus.noises_worry_worst_upset"  

Select variables

[1] 0

NBR

Read in data

Select variables

RAMP

Read in data

Select variables

Join tibbles together

[1] 533 125

edgi data frame list

glad data frame list

Removing all prepandemic dataframes from NBR/RAMP (prepandemic measures don’t exist for these cohorts)

Data summary
Name dat.raw
Number of rows 2304
Number of columns 494
_______________________
Column type frequency:
character 5
factor 219
numeric 268
POSIXct 2
________________________
Group variables None

Variable type: character

skim_variable n_missing complete_rate min max empty n_unique whitespace
Sample 0 1.00 4 4 0 1 0
COPING_ID 1771 0.23 9 24 0 533 0
personality_cluster_a 2304 0.00 NA NA 0 0 0
personality_cluster_b 2304 0.00 NA NA 0 0 0
personality_cluster_c 2304 0.00 NA NA 0 0 0

Variable type: factor

skim_variable n_missing complete_rate ordered n_unique top_counts
Gender_unc 118 0.95 FALSE 4 Fem: 2088, Mal: 54, Non: 36, Pre: 8
Sex 99 0.96 FALSE 2 Fem: 2164, Mal: 41
demographics.college_or_university_degree 115 0.95 FALSE 2 Not: 1133, Col: 1056
demographics.a_levelsas_levels_or_equivalent 115 0.95 FALSE 2 A l: 1593, Not: 596
demographics.o_levelsgcses_or_equivalent 115 0.95 FALSE 2 O l: 1726, Not: 463
demographics.cses_or_equivalent 115 0.95 FALSE 2 Not: 2119, CSE: 70
demographics.nvq_or_hnd_or_hnc_or_equivalent 115 0.95 FALSE 2 Not: 1929, NVQ: 260
Ethnicity_unc 117 0.95 FALSE 6 Whi: 2049, Mix: 71, Asi: 37, Oth: 23
Gender 118 0.95 FALSE 4 Fem: 2088, Mal: 54, Non: 36, Pre: 8
Ethnicity 117 0.95 FALSE 6 Whi: 2049, Mix: 71, Asi: 37, Oth: 23
age_category 38 0.98 FALSE 8 19-: 955, 26-: 555, 16-: 371, 36-: 204
highest_education_prepan 167 0.93 FALSE 4 Uni: 1056, A-l: 722, GCS: 292, NVQ: 67
employment.phd 1771 0.23 FALSE 2 Not: 520, PhD: 13
employment.masters_degree_or_equivalent 1771 0.23 FALSE 2 Not: 465, Mas: 68
employment.postgraduate_degree_or_equivalent 1771 0.23 FALSE 2 Not: 477, Pos: 56
employment.bachelors_degree_or_equivalent 1771 0.23 FALSE 2 Not: 297, Bac: 236
employment.a_levelsas_levels_or_equivalent 1771 0.23 FALSE 2 A l: 370, Not: 163
employment.o_levelsgcses_or_equivalent 1771 0.23 FALSE 2 O l: 416, Not: 117
employment.cses_or_equivalent 1771 0.23 FALSE 2 Not: 516, CSE: 17
employment.nvq_or_hnd_or_hnc_or_equivalent 1771 0.23 FALSE 2 Not: 459, NVQ: 74
employment.government_work_key_workers 1984 0.14 FALSE 10 Non: 135, Hea: 75, Edu: 49, Oth: 24
employment.unemployed 1771 0.23 FALSE 2 Not: 472, Une: 61
employment.zerohours_contract 1771 0.23 FALSE 2 Not: 517, Zer: 16
employment.stayathome_parent_or_carer 1771 0.23 FALSE 2 Not: 519, Sta: 14
employment.retired 1771 0.23 FALSE 2 Not: 516, Ret: 17
employment.student_gcse_or_a_level 1771 0.23 FALSE 2 Not: 454, Stu: 79
employment.student_university 1771 0.23 FALSE 2 Not: 429, Stu: 104
employment.became_unemployed 1906 0.17 FALSE 2 Not: 372, Bec: 26
employment.furloughed_or_paid_leave_government_funded 1906 0.17 FALSE 2 Not: 347, Fur: 51
employment.furloughed_or_paid_leave_company_funded 1906 0.17 FALSE 2 Not: 387, Fur: 11
employment.paid_leave_furloughed 1906 0.17 FALSE 2 Not: 381, Fur: 17
highest_education 1782 0.23 FALSE 4 Uni: 265, A-l: 166, GCS: 73, NVQ: 18
key_worker 1771 0.23 FALSE 2 No : 348, Key: 185
ocir.felt_pandemic_feelings 2162 0.06 FALSE 4 A l: 68, No : 59, Muc: 12, A l: 3
ocir.i_repeatedly_check_doors_windows_drawers_etc_retro 2162 0.06 FALSE 5 Not: 88, A l: 29, Mod: 12, A l: 9
ocir.arranged_things_change_upset_retro 2162 0.06 FALSE 5 A l: 36, Not: 33, Ext: 27, A l: 24
ocir.repeat_feel_numbers_retro 2162 0.06 FALSE 5 Not: 92, A l: 18, Mod: 16, A l: 8
ocir.clean_simply_wash_feel_retro 2162 0.06 FALSE 5 Not: 64, A l: 30, Mod: 21, A l: 16
ocir.mind_upset_unpleasant_thoughts_retro 2162 0.06 FALSE 5 Ext: 35, A l: 30, Mod: 29, A l: 27
ocir.afraid_avoid_throwing_things_retro 2162 0.06 FALSE 5 Not: 64, A l: 38, Mod: 20, A l: 17
ocir.light_switches_water_taps_retro 2162 0.06 FALSE 5 Not: 105, A l: 16, Mod: 12, A l: 5
ocir.arranged_things_retro 2162 0.06 FALSE 5 A l: 42, Not: 41, Mod: 23, A l: 19
ocir.good_feel_bad_numbers_retro 2162 0.06 FALSE 5 Not: 79, A l: 18, A l: 16, Ext: 15
ocir.hands_longer_wash_retro 2162 0.06 FALSE 5 Not: 90, A l: 15, Mod: 13, Ext: 13
ocir.saved_things_retro 2162 0.06 FALSE 5 Not: 87, A l: 24, Mod: 17, A l: 10
ocir.frequently_difficulty_rid_nasty_retro 2162 0.06 FALSE 5 A l: 34, Not: 31, Ext: 30, Mod: 26
ocir.i_check_things_more_often_than_necessary_retro 2162 0.06 FALSE 5 A l: 42, Not: 38, Mod: 29, A l: 21
ocir.arranged_properly_objects_upset_retro 2162 0.06 FALSE 5 Not: 42, A l: 34, Mod: 29, Ext: 20
ocir.feel_compelled_count_things_retro 2162 0.06 FALSE 5 Not: 72, A l: 33, Mod: 15, A l: 11
ocir.strangers_touch_touched_difficult_retro 2162 0.06 FALSE 5 Not: 55, A l: 31, Mod: 21, Ext: 21
ocir.control_difficult_find_thoughts_retro 2162 0.06 FALSE 5 Ext: 46, A l: 30, Mod: 29, A l: 29
ocir.i_collect_things_i_dont_need_retro 2162 0.06 FALSE 5 Not: 85, A l: 31, Mod: 15, A l: 7
ocir.i_repeatedly_check_doors_windows_drawers_etc_base 2221 0.04 FALSE 5 Not: 58, A l: 16, Mod: 5, A l: 2
ocir.arranged_things_change_upset_base 2221 0.04 FALSE 5 A l: 27, Not: 26, Mod: 16, Ext: 9
ocir.repeat_feel_numbers_base 2221 0.04 FALSE 5 Not: 59, A l: 12, Mod: 7, A l: 3
ocir.clean_simply_wash_feel_base 2221 0.04 FALSE 5 Not: 50, A l: 16, Mod: 10, A l: 5
ocir.mind_upset_unpleasant_thoughts_base 2221 0.04 FALSE 5 A l: 24, Mod: 20, A l: 14, Not: 13
ocir.afraid_avoid_throwing_things_base 2221 0.04 FALSE 5 Not: 43, A l: 24, Mod: 12, A l: 3
ocir.light_switches_water_taps_base 2221 0.04 FALSE 5 Not: 61, A l: 14, Mod: 4, Ext: 3
ocir.arranged_things_base 2221 0.04 FALSE 5 A l: 29, Not: 28, Mod: 14, Ext: 7
ocir.good_feel_bad_numbers_base 2221 0.04 FALSE 5 Not: 52, A l: 14, Mod: 7, Ext: 6
ocir.hands_longer_wash_base 2221 0.04 FALSE 5 Not: 50, A l: 19, Mod: 7, A l: 5
ocir.saved_things_base 2221 0.04 FALSE 4 Not: 58, A l: 16, A l: 5, Mod: 4
ocir.frequently_difficulty_rid_nasty_base 2221 0.04 FALSE 5 Mod: 22, Not: 18, A l: 18, A l: 14
ocir.i_check_things_more_often_than_necessary_base 2221 0.04 FALSE 5 Not: 36, A l: 29, Mod: 12, A l: 3
ocir.arranged_properly_objects_upset_base 2221 0.04 FALSE 5 Not: 30, A l: 27, Mod: 14, A l: 6
ocir.feel_compelled_count_things_base 2221 0.04 FALSE 5 Not: 50, A l: 13, Mod: 8, A l: 8
ocir.strangers_touch_touched_difficult_base 2221 0.04 FALSE 5 Not: 45, A l: 14, Mod: 10, A l: 10
ocir.control_difficult_find_thoughts_base 2221 0.04 FALSE 5 Mod: 25, A l: 19, A l: 17, Ext: 13
ocir.i_collect_things_i_dont_need_base 2221 0.04 FALSE 5 Not: 47, A l: 20, Mod: 12, A l: 3
anxiety_disorders 137 0.94 FALSE 2 Anx: 1333, No : 834
mhd.specific_phobia_e.g._phobia_of_flying 137 0.94 FALSE 2 Not: 2092, Spe: 75
mhd.social_anxiety_or_social_phobia 137 0.94 FALSE 2 Not: 1802, Soc: 365
agoraphobia_panic_disorder 137 0.94 FALSE 2 No : 1589, Ago: 578
depressive_disorders 137 0.94 FALSE 2 Dep: 1427, No : 740
eating_disorders 178 0.92 FALSE 2 Eat: 1718, No : 408
obsessive_compulsive_disorders 137 0.94 FALSE 2 No : 1565, Obs: 602
psychotic_disorders 159 0.93 FALSE 2 No : 2095, Psy: 50
mhd.mania_hypomania_bipolar_or_manicdepression 137 0.94 FALSE 2 Not: 2082, Man: 85
mhd.posttraumatic_stress_disorder_ptsd 137 0.94 FALSE 2 Not: 1900, Pos: 267
autism_spectrum_disorder 159 0.93 FALSE 2 No : 2042, Aut: 103
mhd.attention_deficit_hyperactivity_disorder 159 0.93 FALSE 2 Not: 2083, Att: 62
mhd.personality_disorder 159 0.93 FALSE 2 Not: 1903, Per: 242
depression_and_anxiety 137 0.94 FALSE 4 Dep: 1106, No : 513, Onl: 321, Onl: 227
restricting_vs_binge_eating_eating_disorders 178 0.92 FALSE 3 Ano: 1404, No : 408, Eat: 314
bipolar_and_schizophrenia 164 0.93 FALSE 4 No : 2022, Onl: 68, Onl: 33, Psy: 17
control 138 0.94 FALSE 2 No : 2090, Con: 76
comorbidity_total_count_factor 351 0.85 FALSE 4 3+ : 629, 2 c: 534, 1 c: 413, No : 377
gad.feeling_nervous_anxious_or_on_edge_prepan 2194 0.05 FALSE 4 Sev: 37, Nea: 36, Mor: 21, Not: 16
gad.control_worrying_stop_prepan 2194 0.05 FALSE 4 Nea: 34, Sev: 30, Not: 27, Mor: 19
gad.worrying_too_much_about_different_things_prepan 2194 0.05 FALSE 4 Nea: 35, Sev: 33, Mor: 23, Not: 19
gad.trouble_relaxing_prepan 2194 0.05 FALSE 4 Nea: 39, Sev: 33, Mor: 22, Not: 16
gad.sit_restless_hard_prepan 2194 0.05 FALSE 4 Not: 48, Sev: 31, Nea: 16, Mor: 15
gad.becoming_easily_annoyed_or_irritable_prepan 2194 0.05 FALSE 4 Sev: 51, Not: 24, Mor: 22, Nea: 13
gad.awful_feeling_afraid_happen_prepan 2194 0.05 FALSE 4 Not: 41, Sev: 29, Mor: 22, Nea: 18
pcl.stressful_experience_repeated_images_prepan 297 0.87 FALSE 5 Not: 490, Qui: 484, A l: 454, Mod: 300
pcl.stressful_experience_upset_reminded_prepan 299 0.87 FALSE 5 Qui: 541, Ext: 416, A l: 390, Mod: 367
pcl.stressful_situation_avoiding_activities_prepan 302 0.87 FALSE 5 Not: 524, A l: 447, Qui: 392, Mod: 333
pcl.cut_people_feeling_distant_prepan 297 0.87 FALSE 5 Ext: 657, Qui: 527, Mod: 326, A l: 316
pcl.feeling_irritable_or_having_angry_outbursts_prepan 297 0.87 FALSE 5 Qui: 536, A l: 435, Mod: 382, Ext: 380
pcl.difficulty_concentrating_prepan 303 0.87 FALSE 5 Qui: 589, Ext: 567, Mod: 356, A l: 348
phq.little_interest_or_pleasure_in_doing_things_prepan 2194 0.05 FALSE 4 Sev: 33, Not: 29, Nea: 26, Mor: 22
phq.feeling_down_depressed_or_hopeless_prepan 2194 0.05 FALSE 4 Sev: 45, Nea: 27, Not: 20, Mor: 18
phq.staying_asleep_sleeping_trouble_prepan 2194 0.05 FALSE 4 Nea: 32, Not: 30, Sev: 24, Mor: 24
phq.feeling_tired_or_having_little_energy_prepan 2194 0.05 FALSE 4 Nea: 44, Sev: 26, Mor: 21, Not: 19
phq.poor_appetite_or_overeating_prepan 2194 0.05 FALSE 4 Not: 37, Nea: 27, Sev: 24, Mor: 22
phq.feeling_bad_failure_family_prepan 2194 0.05 FALSE 4 Nea: 42, Sev: 29, Not: 21, Mor: 18
phq.trouble_concentrating_reading_newspaper_prepan 2194 0.05 FALSE 4 Not: 36, Sev: 29, Mor: 24, Nea: 21
phq.moving_fidgety_noticed_opposite_prepan 2194 0.05 FALSE 4 Not: 68, Sev: 26, Mor: 10, Nea: 6
phq.dead_hurting_thoughts_prepan 2194 0.05 FALSE 4 Not: 43, Sev: 34, Nea: 18, Mor: 15
ocir.i_repeatedly_check_doors_windows_drawers_etc_prepan 2194 0.05 FALSE 5 Not: 64, A l: 27, Mod: 11, A l: 4
ocir.arranged_things_change_upset_prepan 2194 0.05 FALSE 5 A l: 45, Mod: 23, Not: 17, Ext: 14
ocir.repeat_feel_numbers_prepan 2194 0.05 FALSE 5 Not: 81, A l: 13, Mod: 7, A l: 5
ocir.clean_simply_wash_feel_prepan 2194 0.05 FALSE 5 Not: 59, A l: 27, Mod: 12, A l: 10
ocir.mind_upset_unpleasant_thoughts_prepan 2194 0.05 FALSE 5 Not: 26, A l: 26, A l: 22, Mod: 21
ocir.afraid_avoid_throwing_things_prepan 2194 0.05 FALSE 5 A l: 43, Not: 42, Mod: 16, A l: 8
ocir.light_switches_water_taps_prepan 2194 0.05 FALSE 5 Not: 78, A l: 16, Mod: 7, A l: 5
ocir.arranged_things_prepan 2194 0.05 FALSE 5 A l: 43, Not: 22, Mod: 17, A l: 16
ocir.good_feel_bad_numbers_prepan 2194 0.05 FALSE 5 Not: 59, A l: 24, A l: 10, Mod: 9
ocir.hands_longer_wash_prepan 2194 0.05 FALSE 5 Not: 71, A l: 19, A l: 10, Mod: 6
ocir.saved_things_prepan 2194 0.05 FALSE 5 Not: 43, A l: 28, Mod: 19, A l: 17
ocir.frequently_difficulty_rid_nasty_prepan 2194 0.05 FALSE 5 Not: 36, A l: 24, A l: 23, Mod: 17
ocir.i_check_things_more_often_than_necessary_prepan 2194 0.05 FALSE 5 A l: 34, Mod: 25, Not: 24, A l: 19
ocir.arranged_properly_objects_upset_prepan 2194 0.05 FALSE 5 A l: 45, Mod: 23, Not: 17, Ext: 14
ocir.feel_compelled_count_things_prepan 2194 0.05 FALSE 5 Not: 58, A l: 26, A l: 14, Mod: 6
ocir.strangers_touch_touched_difficult_prepan 2194 0.05 FALSE 5 Not: 59, A l: 28, Mod: 12, A l: 7
ocir.control_difficult_find_thoughts_prepan 2194 0.05 FALSE 5 A l: 34, A l: 24, Mod: 19, Ext: 18
ocir.i_collect_things_i_dont_need_prepan 2194 0.05 FALSE 5 Not: 57, A l: 39, Mod: 8, A l: 5
gad.problems_made_difficult_care 1791 0.22 FALSE 4 Som: 291, Ver: 96, Not: 83, Ext: 43
gad.pandemic_felt_feelings 1771 0.23 FALSE 5 A l: 260, No : 113, Muc: 92, A l: 54
gad.feeling_nervous_anxious_or_on_edge_retro 1885 0.18 FALSE 4 Sev: 207, Mor: 99, Nea: 71, Not: 42
gad.control_worrying_stop_retro 1885 0.18 FALSE 4 Sev: 180, Mor: 95, Not: 86, Nea: 58
gad.worrying_too_much_about_different_things_retro 1885 0.18 FALSE 4 Sev: 184, Mor: 88, Nea: 75, Not: 72
gad.trouble_relaxing_retro 1885 0.18 FALSE 4 Sev: 172, Not: 98, Mor: 76, Nea: 73
gad.sit_restless_hard_retro 1885 0.18 FALSE 4 Not: 208, Sev: 122, Mor: 48, Nea: 41
gad.becoming_easily_annoyed_or_irritable_retro 1885 0.18 FALSE 4 Sev: 210, Not: 105, Mor: 59, Nea: 45
gad.awful_feeling_afraid_happen_retro 1885 0.18 FALSE 4 Not: 170, Sev: 151, Mor: 56, Nea: 42
gad.feeling_nervous_anxious_or_on_edge_base 1771 0.23 FALSE 4 Sev: 192, Nea: 171, Mor: 123, Not: 47
gad.control_worrying_stop_base 1771 0.23 FALSE 4 Nea: 152, Sev: 150, Mor: 137, Not: 94
gad.worrying_too_much_about_different_things_base 1771 0.23 FALSE 4 Nea: 168, Sev: 157, Mor: 128, Not: 80
gad.trouble_relaxing_base 1772 0.23 FALSE 4 Nea: 187, Sev: 149, Mor: 121, Not: 75
gad.sit_restless_hard_base 1771 0.23 FALSE 4 Not: 209, Sev: 142, Nea: 94, Mor: 88
gad.becoming_easily_annoyed_or_irritable_base 1771 0.23 FALSE 4 Sev: 191, Mor: 129, Nea: 119, Not: 94
gad.awful_feeling_afraid_happen_base 1771 0.23 FALSE 4 Not: 161, Sev: 154, Nea: 118, Mor: 100
pcl.stressful_experience_repeated_images_base 1773 0.23 FALSE 5 Not: 148, A l: 143, Qui: 118, Mod: 64
pcl.stressful_experience_upset_reminded_base 1772 0.23 FALSE 5 Qui: 123, A l: 121, Not: 119, Mod: 98
pcl.stressful_situation_avoiding_activities_base 1772 0.23 FALSE 5 Not: 229, A l: 91, Mod: 89, Qui: 75
pcl.cut_people_feeling_distant_base 1771 0.23 FALSE 5 Ext: 153, Qui: 140, A l: 91, Mod: 85
pcl.feeling_irritable_or_having_angry_outbursts_base 1772 0.23 FALSE 5 A l: 145, Mod: 130, Not: 115, Qui: 92
pcl.difficulty_concentrating_base 1771 0.23 FALSE 5 Qui: 146, A l: 117, Mod: 107, Ext: 101
pcl.stressful_experience_repeated_images_retro 1921 0.17 FALSE 2 No: 323, Yes: 60
pcl.stressful_experience_upset_reminded_retro 1885 0.18 FALSE 2 No: 337, Yes: 82
pcl.stressful_situation_avoiding_activities_retro 1989 0.14 FALSE 2 No: 251, Yes: 64
pcl.cut_people_feeling_distant_retro 1831 0.21 FALSE 2 Yes: 325, No: 148
pcl.feeling_irritable_or_having_angry_outbursts_retro 1883 0.18 FALSE 2 No: 230, Yes: 191
pcl.difficulty_concentrating_retro 1833 0.20 FALSE 2 No: 268, Yes: 203
phq.problems_made_difficult_care 1777 0.23 FALSE 4 Som: 299, Ver: 99, Not: 82, Ext: 47
phq.pandemic_felt_feelings 1771 0.23 FALSE 5 A l: 286, Muc: 94, No : 92, A l: 50
phq.little_interest_or_pleasure_in_doing_things_retro 1864 0.19 FALSE 4 Sev: 200, Not: 119, Mor: 83, Nea: 38
phq.feeling_down_depressed_or_hopeless_retro 1864 0.19 FALSE 4 Sev: 216, Mor: 93, Not: 71, Nea: 60
phq.staying_asleep_sleeping_trouble_retro 1864 0.19 FALSE 4 Sev: 165, Not: 129, Mor: 82, Nea: 64
phq.feeling_tired_or_having_little_energy_retro 1864 0.19 FALSE 4 Sev: 197, Mor: 94, Nea: 77, Not: 72
phq.poor_appetite_or_overeating_retro 1866 0.19 FALSE 4 Sev: 140, Not: 124, Mor: 91, Nea: 83
phq.feeling_bad_failure_family_retro 1864 0.19 FALSE 4 Sev: 170, Mor: 101, Nea: 87, Not: 82
phq.trouble_concentrating_reading_newspaper_retro 1864 0.19 FALSE 4 Sev: 178, Not: 124, Mor: 93, Nea: 45
phq.moving_fidgety_noticed_opposite_retro 1864 0.19 FALSE 4 Not: 302, Sev: 98, Mor: 22, Nea: 18
phq.dead_hurting_thoughts_retro 1864 0.19 FALSE 4 Not: 229, Sev: 123, Mor: 53, Nea: 35
phq.little_interest_or_pleasure_in_doing_things_base 1772 0.23 FALSE 4 Sev: 223, Nea: 114, Mor: 110, Not: 85
phq.feeling_down_depressed_or_hopeless_base 1772 0.23 FALSE 4 Sev: 216, Nea: 127, Mor: 118, Not: 71
phq.staying_asleep_sleeping_trouble_base 1772 0.23 FALSE 4 Nea: 181, Sev: 140, Mor: 134, Not: 77
phq.feeling_tired_or_having_little_energy_base 1772 0.23 FALSE 4 Nea: 179, Sev: 166, Mor: 144, Not: 43
phq.poor_appetite_or_overeating_base 1773 0.23 FALSE 4 Nea: 162, Sev: 135, Not: 119, Mor: 115
phq.feeling_bad_failure_family_base 1772 0.23 FALSE 4 Nea: 172, Sev: 153, Mor: 122, Not: 85
phq.trouble_concentrating_reading_newspaper_base 1772 0.23 FALSE 4 Sev: 176, Nea: 143, Mor: 120, Not: 93
phq.moving_fidgety_noticed_opposite_base 1772 0.23 FALSE 4 Not: 320, Sev: 120, Mor: 58, Nea: 34
phq.dead_hurting_thoughts_base 1772 0.23 FALSE 4 Not: 262, Sev: 144, Nea: 67, Mor: 59
alsfrs.limb_weakness_noticed_past 1773 0.23 FALSE 2 No: 426, Yes: 105
alsfrs.normal 2200 0.05 FALSE 2 Nor: 76, Not: 28
alsfrs.slow_or_sloppy_all_words_are_legible 2200 0.05 FALSE 2 Not: 83, Slo: 21
alsfrs.not_all_words_are_legible 2200 0.05 FALSE 2 Not: 99, Not: 5
alsfrs.able_to_grip_pen 2200 0.05 FALSE 2 Not: 102, Abl: 2
alsfrs.unable_to_grip_pen 2200 0.05 FALSE 2 Not: 100, Una: 4
alsfrs.have_you_noticed_any_difficulty_walking 2200 0.05 FALSE 4 Nor: 66, Ear: 29, Nee: 8, No : 1
alsfrs.do_you_have_any_difficulty_climbing_stairs 2199 0.05 FALSE 5 Nor: 55, Mil: 25, Slo: 18, Nee: 5
ess.felt_excessively_sleepy_past 1775 0.23 FALSE 2 Yes: 303, No: 226
ess.sitting_and_reading 2001 0.13 FALSE 4 Sli: 131, Wou: 70, Mod: 70, Hig: 32
ess.watching_tv 2001 0.13 FALSE 4 Sli: 124, Mod: 78, Wou: 62, Hig: 39
ess.sitting_inactive_in_a_public_place 2002 0.13 FALSE 4 Wou: 191, Sli: 75, Mod: 22, Hig: 14
ess.break_passenger_car_hour 2001 0.13 FALSE 4 Sli: 98, Wou: 71, Mod: 70, Hig: 64
ess.afternoon_rest_circumstances_lying 2001 0.13 FALSE 4 Hig: 131, Mod: 79, Sli: 69, Wou: 24
ess.sitting_and_talking_to_someone 2001 0.13 FALSE 4 Wou: 265, Sli: 31, Hig: 4, Mod: 3
ess.sitting_quietly_after_a_lunch_without_alcohol 2002 0.13 FALSE 4 Wou: 147, Sli: 92, Mod: 40, Hig: 23
ess.car_minutes_stopped_traffic 2001 0.13 FALSE 4 Wou: 250, Sli: 31, Hig: 14, Mod: 8
ess.insomnia 1779 0.23 FALSE 2 Not: 459, Ins: 66
ess.narcolepsy 1779 0.23 FALSE 1 Not: 525, Nar: 0
ess.rem_sleep_behaviour_disorder 1779 0.23 FALSE 2 Not: 524, REM: 1
ess.restless_legs_syndrome 1779 0.23 FALSE 2 Not: 502, Res: 23
ess.sleep_apnea 1779 0.23 FALSE 2 Not: 522, Sle: 3
ess.sleep_terrors 1779 0.23 FALSE 2 Not: 506, Sle: 19
ess.sleepwalking 1779 0.23 FALSE 2 Not: 519, Sle: 6
ess.other 1779 0.23 FALSE 2 Not: 517, Oth: 8
ess.none 1779 0.23 FALSE 2 Non: 431, Not: 94
midas.headaches_suffered_past_month 1773 0.23 FALSE 2 No: 274, Yes: 257
midas.days_past_month_miss_work_school 2304 0.00 FALSE 0 Did: 0
midas.days_past_month_work_school_half_productivity 2304 0.00 FALSE 0 Was: 0
midas.days_past_month_miss_housework 2304 0.00 FALSE 0 Did: 0
midas.days_past_month_housework_half_productivity 2304 0.00 FALSE 0 Was: 0
midas.days_past_month_miss_social_activities 2304 0.00 FALSE 0 Did: 0
nmss.ability_taste_food_smell 1773 0.23 FALSE 2 No: 494, Yes: 37
nmss.severe_taste_smell_loss 2267 0.02 FALSE 6 Mil: 14, Min: 10, No : 5, Sev: 4
nmsw.drink_problems_choking_difficulty 1773 0.23 FALSE 2 No: 486, Yes: 45
nmsw.regularly_night_pass_urine 1773 0.23 FALSE 2 No: 348, Yes: 183
nmsw.sex_difficult_finding 1778 0.23 FALSE 2 No: 485, Yes: 41
nmsw.weak_standing_feeling_light 1773 0.23 FALSE 2 Yes: 301, No: 230
nmsw.acting_moving_sleep_talking 1774 0.23 FALSE 2 No: 445, Yes: 85
nmsw.double_vision 1773 0.23 FALSE 2 No: 483, Yes: 48
tinnitus.ears_noises_minutes_head 1773 0.23 FALSE 2 No: 429, Yes: 102
tinnitus.ears_noises_minutes_head_frequency 2202 0.04 FALSE 5 Som: 55, Now: 19, Now: 18, Not: 9
tinnitus.noises_worry_worst_upset 2202 0.04 FALSE 4 Sli: 53, Mod: 30, Not: 13, Sev: 6

Variable type: numeric

skim_variable n_missing complete_rate mean sd p0 p25 p50 p75 p100 hist
ID 0 1.00 2824.08 1656.12 206 1398.25 2590.5 4141.75 6159 ▇▇▆▅▅
Age_uncleaned 34 0.99 27.10 10.79 0 20.00 24.0 31.00 73 ▁▇▂▁▁
EduYrs 209 0.91 16.16 3.22 0 14.00 16.0 18.00 40 ▁▇▆▁▁
Gender_numeric 118 0.95 1.00 0.24 0 1.00 1.0 1.00 3 ▁▇▁▁▁
Sex_numeric 99 0.96 0.98 0.14 0 1.00 1.0 1.00 1 ▁▁▁▁▇
demographics.college_or_university_degree_numeric 115 0.95 0.48 0.50 0 0.00 0.0 1.00 1 ▇▁▁▁▇
demographics.a_levelsas_levels_or_equivalent_numeric 115 0.95 0.73 0.45 0 0.00 1.0 1.00 1 ▃▁▁▁▇
demographics.o_levelsgcses_or_equivalent_numeric 115 0.95 0.79 0.41 0 1.00 1.0 1.00 1 ▂▁▁▁▇
demographics.cses_or_equivalent_numeric 115 0.95 0.03 0.18 0 0.00 0.0 0.00 1 ▇▁▁▁▁
demographics.nvq_or_hnd_or_hnc_or_equivalent_numeric 115 0.95 0.12 0.32 0 0.00 0.0 0.00 1 ▇▁▁▁▁
Ethnicity_numeric 117 0.95 1.13 0.62 1 1.00 1.0 1.00 6 ▇▁▁▁▁
Age 38 0.98 27.13 10.77 16 20.00 24.0 31.00 73 ▇▂▁▁▁
age_category_numeric 38 0.98 2.55 1.24 1 2.00 2.0 3.00 8 ▇▃▂▁▁
highest_education_prepan_numeric 167 0.93 3.19 1.02 1 3.00 3.0 4.00 4 ▂▁▁▆▇
employment.phd_numeric 1771 0.23 0.02 0.15 0 0.00 0.0 0.00 1 ▇▁▁▁▁
employment.masters_degree_or_equivalent_numeric 1771 0.23 0.13 0.33 0 0.00 0.0 0.00 1 ▇▁▁▁▁
employment.postgraduate_degree_or_equivalent_numeric 1771 0.23 0.11 0.31 0 0.00 0.0 0.00 1 ▇▁▁▁▁
employment.bachelors_degree_or_equivalent_numeric 1771 0.23 0.44 0.50 0 0.00 0.0 1.00 1 ▇▁▁▁▆
employment.a_levelsas_levels_or_equivalent_numeric 1771 0.23 0.69 0.46 0 0.00 1.0 1.00 1 ▃▁▁▁▇
employment.o_levelsgcses_or_equivalent_numeric 1771 0.23 0.78 0.41 0 1.00 1.0 1.00 1 ▂▁▁▁▇
employment.cses_or_equivalent_numeric 1771 0.23 0.03 0.18 0 0.00 0.0 0.00 1 ▇▁▁▁▁
employment.nvq_or_hnd_or_hnc_or_equivalent_numeric 1771 0.23 0.14 0.35 0 0.00 0.0 0.00 1 ▇▁▁▁▁
employment.government_work_key_workers_numeric 1984 0.14 2.07 3.20 0 0.00 1.0 2.00 11 ▇▁▁▁▁
employment.unemployed_numeric 1771 0.23 0.11 0.32 0 0.00 0.0 0.00 1 ▇▁▁▁▁
employment.zerohours_contract_numeric 1771 0.23 0.03 0.17 0 0.00 0.0 0.00 1 ▇▁▁▁▁
employment.stayathome_parent_or_carer_numeric 1771 0.23 0.03 0.16 0 0.00 0.0 0.00 1 ▇▁▁▁▁
employment.retired_numeric 1771 0.23 0.03 0.18 0 0.00 0.0 0.00 1 ▇▁▁▁▁
employment.student_gcse_or_a_level_numeric 1771 0.23 0.15 0.36 0 0.00 0.0 0.00 1 ▇▁▁▁▂
employment.student_university_numeric 1771 0.23 0.20 0.40 0 0.00 0.0 0.00 1 ▇▁▁▁▂
employment.became_unemployed_numeric 1906 0.17 0.07 0.25 0 0.00 0.0 0.00 1 ▇▁▁▁▁
employment.furloughed_or_paid_leave_government_funded_numeric 1906 0.17 0.13 0.33 0 0.00 0.0 0.00 1 ▇▁▁▁▁
employment.furloughed_or_paid_leave_company_funded_numeric 1906 0.17 0.03 0.16 0 0.00 0.0 0.00 1 ▇▁▁▁▁
employment.paid_leave_furloughed_numeric 1906 0.17 0.04 0.20 0 0.00 0.0 0.00 1 ▇▁▁▁▁
highest_education_numeric 1782 0.23 3.19 1.03 1 3.00 4.0 4.00 4 ▂▁▁▅▇
key_worker_numeric 1771 0.23 0.35 0.48 0 0.00 0.0 1.00 1 ▇▁▁▁▅
ocir.felt_pandemic_feelings_numeric 2162 0.06 2.37 0.67 1 2.00 2.0 3.00 4 ▂▇▁▇▁
ocir.i_repeatedly_check_doors_windows_drawers_etc_retro_numeric 2162 0.06 0.68 1.06 0 0.00 0.0 1.00 4 ▇▂▁▁▁
ocir.arranged_things_change_upset_retro_numeric 2162 0.06 1.83 1.45 0 1.00 2.0 3.00 4 ▇▇▅▅▆
ocir.repeat_feel_numbers_retro_numeric 2162 0.06 0.75 1.20 0 0.00 0.0 1.00 4 ▇▂▂▁▁
ocir.clean_simply_wash_feel_retro_numeric 2162 0.06 1.15 1.32 0 0.00 1.0 2.00 4 ▇▃▂▂▂
ocir.mind_upset_unpleasant_thoughts_retro_numeric 2162 0.06 2.22 1.39 0 1.00 2.0 3.00 4 ▅▆▆▇▇
ocir.afraid_avoid_throwing_things_retro_numeric 2162 0.06 0.99 1.13 0 0.00 1.0 2.00 4 ▇▅▂▂▁
ocir.light_switches_water_taps_retro_numeric 2162 0.06 0.50 0.99 0 0.00 0.0 1.00 4 ▇▁▁▁▁
ocir.arranged_things_retro_numeric 2162 0.06 1.50 1.35 0 0.00 1.0 2.75 4 ▇▇▅▃▃
ocir.good_feel_bad_numbers_retro_numeric 2162 0.06 1.08 1.44 0 0.00 0.0 2.00 4 ▇▂▂▂▂
ocir.hands_longer_wash_retro_numeric 2162 0.06 0.89 1.36 0 0.00 0.0 2.00 4 ▇▁▁▁▁
ocir.saved_things_retro_numeric 2162 0.06 0.73 1.10 0 0.00 0.0 1.00 4 ▇▂▂▁▁
ocir.frequently_difficulty_rid_nasty_retro_numeric 2162 0.06 2.08 1.45 0 1.00 2.0 3.00 4 ▇▅▆▇▇
ocir.i_check_things_more_often_than_necessary_retro_numeric 2162 0.06 1.49 1.26 0 0.00 1.0 2.00 4 ▇▇▆▃▂
ocir.arranged_properly_objects_upset_retro_numeric 2162 0.06 1.57 1.39 0 0.00 1.0 3.00 4 ▇▆▆▃▃
ocir.feel_compelled_count_things_retro_numeric 2162 0.06 0.99 1.28 0 0.00 0.0 2.00 4 ▇▃▂▁▁
ocir.strangers_touch_touched_difficult_retro_numeric 2162 0.06 1.40 1.45 0 0.00 1.0 2.00 4 ▇▅▃▂▃
ocir.control_difficult_find_thoughts_retro_numeric 2162 0.06 2.53 1.29 0 1.00 3.0 4.00 4 ▂▅▅▅▇
ocir.i_collect_things_i_dont_need_retro_numeric 2162 0.06 0.69 1.03 0 0.00 0.0 1.00 4 ▇▃▂▁▁
ocir.i_repeatedly_check_doors_windows_drawers_etc_base_numeric 2221 0.04 0.48 0.90 0 0.00 0.0 1.00 4 ▇▂▁▁▁
ocir.arranged_things_change_upset_base_numeric 2221 0.04 1.33 1.28 0 0.00 1.0 2.00 4 ▇▇▅▂▂
ocir.repeat_feel_numbers_base_numeric 2221 0.04 0.52 0.97 0 0.00 0.0 1.00 4 ▇▂▁▁▁
ocir.clean_simply_wash_feel_base_numeric 2221 0.04 0.71 1.05 0 0.00 0.0 1.00 4 ▇▂▂▁▁
ocir.mind_upset_unpleasant_thoughts_base_numeric 2221 0.04 1.86 1.29 0 1.00 2.0 3.00 4 ▅▇▇▅▃
ocir.afraid_avoid_throwing_things_base_numeric 2221 0.04 0.73 0.93 0 0.00 0.0 1.00 4 ▇▅▂▁▁
ocir.light_switches_water_taps_base_numeric 2221 0.04 0.45 0.93 0 0.00 0.0 1.00 4 ▇▂▁▁▁
ocir.arranged_things_base_numeric 2221 0.04 1.20 1.22 0 0.00 1.0 2.00 4 ▇▇▃▂▂
ocir.good_feel_bad_numbers_base_numeric 2221 0.04 0.77 1.23 0 0.00 0.0 1.00 4 ▇▂▁▁▁
ocir.hands_longer_wash_base_numeric 2221 0.04 0.67 1.03 0 0.00 0.0 1.00 4 ▇▃▁▁▁
ocir.saved_things_base_numeric 2221 0.04 0.47 0.85 0 0.00 0.0 1.00 3 ▇▂▁▁▁
ocir.frequently_difficulty_rid_nasty_base_numeric 2221 0.04 1.78 1.33 0 1.00 2.0 3.00 4 ▆▆▇▅▃
ocir.i_check_things_more_often_than_necessary_base_numeric 2221 0.04 0.89 1.02 0 0.00 1.0 1.00 4 ▇▆▂▁▁
ocir.arranged_properly_objects_upset_base_numeric 2221 0.04 1.17 1.21 0 0.00 1.0 2.00 4 ▇▇▃▂▂
ocir.feel_compelled_count_things_base_numeric 2221 0.04 0.83 1.23 0 0.00 0.0 1.00 4 ▇▂▁▁▁
ocir.strangers_touch_touched_difficult_base_numeric 2221 0.04 0.96 1.26 0 0.00 0.0 2.00 4 ▇▂▂▂▁
ocir.control_difficult_find_thoughts_base_numeric 2221 0.04 2.12 1.22 0 1.00 2.0 3.00 4 ▃▆▇▆▅
ocir.i_collect_things_i_dont_need_base_numeric 2221 0.04 0.69 0.94 0 0.00 0.0 1.00 4 ▇▃▂▁▁
ocir.sum_score_retro_raw 1945 0.16 9.12 14.42 0 0.00 0.0 16.00 67 ▇▁▁▁▁
ocir.sum_score_base_raw 1945 0.16 4.08 9.61 0 0.00 0.0 0.00 59 ▇▁▁▁▁
na_per_person_ocir_retro 1945 0.16 10.88 8.81 0 0.00 18.0 18.00 18 ▅▁▁▁▇
na_per_person_ocir_base 1945 0.16 13.84 7.60 0 18.00 18.0 18.00 18 ▂▁▁▁▇
ocir.sum_score_base 2221 0.04 17.64 12.69 0 8.50 15.0 23.00 59 ▇▇▃▁▁
ocir.sum_score_retro 2162 0.06 23.06 14.30 2 12.00 21.0 31.00 67 ▇▇▅▂▁
anxiety_disorders_numeric 137 0.94 0.62 0.49 0 0.00 1.0 1.00 1 ▅▁▁▁▇
mhd.specific_phobia_e.g._phobia_of_flying_numeric 137 0.94 0.03 0.18 0 0.00 0.0 0.00 1 ▇▁▁▁▁
mhd.social_anxiety_or_social_phobia_numeric 137 0.94 0.17 0.37 0 0.00 0.0 0.00 1 ▇▁▁▁▂
agoraphobia_panic_disorder_numeric 137 0.94 0.27 0.44 0 0.00 0.0 1.00 1 ▇▁▁▁▃
depressive_disorders_numeric 137 0.94 0.66 0.47 0 0.00 1.0 1.00 1 ▅▁▁▁▇
eating_disorders_numeric 178 0.92 0.81 0.39 0 1.00 1.0 1.00 1 ▂▁▁▁▇
obsessive_compulsive_disorders_numeric 137 0.94 0.28 0.45 0 0.00 0.0 1.00 1 ▇▁▁▁▃
psychotic_disorders_numeric 159 0.93 0.02 0.15 0 0.00 0.0 0.00 1 ▇▁▁▁▁
mhd.mania_hypomania_bipolar_or_manicdepression_numeric 137 0.94 0.04 0.19 0 0.00 0.0 0.00 1 ▇▁▁▁▁
mhd.posttraumatic_stress_disorder_ptsd_numeric 137 0.94 0.12 0.33 0 0.00 0.0 0.00 1 ▇▁▁▁▁
autism_spectrum_disorder_numeric 159 0.93 0.05 0.21 0 0.00 0.0 0.00 1 ▇▁▁▁▁
mhd.attention_deficit_hyperactivity_disorder_numeric 159 0.93 0.03 0.17 0 0.00 0.0 0.00 1 ▇▁▁▁▁
mhd.personality_disorder_numeric 159 0.93 0.11 0.32 0 0.00 0.0 0.00 1 ▇▁▁▁▁
depression_and_anxiety_numeric 137 0.94 1.12 0.89 0 1.00 1.0 2.00 3 ▃▇▁▂▂
restricting_vs_binge_eating_eating_disorders_numeric 178 0.92 0.96 0.58 0 1.00 1.0 1.00 2 ▂▁▇▁▂
bipolar_and_schizophrenia_numeric 164 0.93 0.13 0.58 0 0.00 0.0 0.00 3 ▇▁▁▁▁
control_numeric 138 0.94 0.04 0.18 0 0.00 0.0 0.00 1 ▇▁▁▁▁
disorders_total_count 207 0.91 2.73 1.58 0 2.00 3.0 4.00 9 ▅▇▅▁▁
comorbidity_total_count_numeric 351 0.85 1.93 1.45 0 1.00 2.0 3.00 8 ▇▇▂▁▁
comorbidity_total_count_factor_numeric 351 0.85 1.72 1.11 0 1.00 2.0 3.00 3 ▅▅▁▇▇
personality_cluster_a_numeric 2304 0.00 NaN NA NA NA NA NA NA
personality_cluster_b_numeric 2304 0.00 NaN NA NA NA NA NA NA
personality_cluster_c_numeric 2304 0.00 NaN NA NA NA NA NA NA
gad.feeling_nervous_anxious_or_on_edge_prepan_numeric 2194 0.05 1.70 1.08 0 1.00 2.0 3.00 3 ▃▇▁▅▇
gad.control_worrying_stop_prepan_numeric 2194 0.05 1.55 1.17 0 1.00 1.0 3.00 3 ▆▇▁▅▇
gad.worrying_too_much_about_different_things_prepan_numeric 2194 0.05 1.67 1.10 0 1.00 2.0 3.00 3 ▅▇▁▅▇
gad.trouble_relaxing_prepan_numeric 2194 0.05 1.76 1.09 0 1.00 2.0 3.00 3 ▃▇▁▅▇
gad.sit_restless_hard_prepan_numeric 2194 0.05 0.99 1.08 0 0.00 1.0 2.00 3 ▇▅▁▂▂
gad.becoming_easily_annoyed_or_irritable_prepan_numeric 2194 0.05 1.22 0.92 0 1.00 1.0 2.00 3 ▃▇▁▃▂
gad.awful_feeling_afraid_happen_prepan_numeric 2194 0.05 1.15 1.10 0 0.00 1.0 2.00 3 ▇▆▁▅▃
gad.sum_score_prepan_raw 2192 0.05 9.87 6.19 0 4.75 10.0 15.00 21 ▇▆▅▇▆
na_per_person_gad_prepan 2192 0.05 0.12 0.93 0 0.00 0.0 0.00 7 ▇▁▁▁▁
gad.sum_score_prepan 2194 0.05 10.05 6.10 0 5.00 10.0 15.00 21 ▇▆▆▇▆
pcl.stressful_experience_repeated_images_prepan_numeric 297 0.87 2.80 1.40 1 2.00 3.0 4.00 5 ▇▇▅▇▅
pcl.stressful_experience_upset_reminded_prepan_numeric 299 0.87 3.20 1.35 1 2.00 3.0 4.00 5 ▅▆▆▇▆
pcl.stressful_situation_avoiding_activities_prepan_numeric 302 0.87 2.75 1.42 1 1.00 3.0 4.00 5 ▇▇▅▆▅
pcl.cut_people_feeling_distant_prepan_numeric 297 0.87 3.58 1.32 1 3.00 4.0 5.00 5 ▂▃▃▆▇
pcl.feeling_irritable_or_having_angry_outbursts_prepan_numeric 297 0.87 3.16 1.33 1 2.00 3.0 4.00 5 ▅▆▆▇▆
pcl.difficulty_concentrating_prepan_numeric 303 0.87 3.55 1.26 1 3.00 4.0 5.00 5 ▂▅▅▇▇
pcl.sum_score_prepan_raw 0 1.00 16.57 8.59 0 12.00 18.0 23.00 30 ▅▃▇▇▆
na_per_person_pcl_prepan 0 1.00 0.78 2.00 0 0.00 0.0 0.00 6 ▇▁▁▁▁
pcl.sum_score_prepan 317 0.86 19.03 6.23 6 14.00 19.0 24.00 30 ▃▆▇▇▅
phq.little_interest_or_pleasure_in_doing_things_prepan_numeric 2194 0.05 1.41 1.12 0 0.00 1.0 2.00 3 ▇▇▁▅▆
phq.feeling_down_depressed_or_hopeless_prepan_numeric 2194 0.05 1.47 1.06 0 1.00 1.0 2.00 3 ▃▇▁▃▅
phq.staying_asleep_sleeping_trouble_prepan_numeric 2194 0.05 1.53 1.18 0 0.00 2.0 3.00 3 ▇▆▁▆▇
phq.feeling_tired_or_having_little_energy_prepan_numeric 2194 0.05 1.82 1.14 0 1.00 2.0 3.00 3 ▃▅▁▃▇
phq.poor_appetite_or_overeating_prepan_numeric 2194 0.05 1.35 1.19 0 0.00 1.0 2.00 3 ▇▅▁▅▆
phq.feeling_bad_failure_family_prepan_numeric 2194 0.05 1.74 1.16 0 1.00 2.0 3.00 3 ▃▆▁▃▇
phq.trouble_concentrating_reading_newspaper_prepan_numeric 2194 0.05 1.27 1.12 0 0.00 1.0 2.00 3 ▇▆▁▅▅
phq.moving_fidgety_noticed_opposite_prepan_numeric 2194 0.05 0.58 0.87 0 0.00 0.0 1.00 3 ▇▃▁▁▁
phq.dead_hurting_thoughts_prepan_numeric 2194 0.05 1.07 1.09 0 0.00 1.0 2.00 3 ▇▆▁▃▃
phq.sum_score_prepan_raw 2192 0.05 12.03 7.51 0 6.00 12.0 18.00 27 ▇▅▇▇▂
na_per_person_phq_prepan 2192 0.05 0.16 1.20 0 0.00 0.0 0.00 9 ▇▁▁▁▁
phq.missing_only_suicide_item_prepan 2192 0.05 0.00 0.00 0 0.00 0.0 0.00 0 ▁▁▇▁▁
phq.sum_score_prepan 2194 0.05 12.25 7.40 0 6.00 12.0 18.00 27 ▇▅▇▇▂
phq.sum_score_8items_prepan 2192 0.05 12.03 7.51 0 6.00 12.0 18.00 27 ▇▅▇▇▂
ocir.i_repeatedly_check_doors_windows_drawers_etc_prepan_numeric 2194 0.05 0.70 1.04 0 0.00 0.0 1.00 4 ▇▃▂▁▁
ocir.arranged_things_change_upset_prepan_numeric 2194 0.05 1.64 1.23 0 1.00 1.0 2.00 4 ▃▇▅▂▂
ocir.repeat_feel_numbers_prepan_numeric 2194 0.05 0.53 1.05 0 0.00 0.0 1.00 4 ▇▁▁▁▁
ocir.clean_simply_wash_feel_prepan_numeric 2194 0.05 0.81 1.07 0 0.00 0.0 1.00 4 ▇▃▂▂▁
ocir.mind_upset_unpleasant_thoughts_prepan_numeric 2194 0.05 1.76 1.37 0 1.00 2.0 3.00 4 ▇▇▆▇▅
ocir.afraid_avoid_throwing_things_prepan_numeric 2194 0.05 0.94 0.95 0 0.00 1.0 1.00 4 ▇▇▃▂▁
ocir.light_switches_water_taps_prepan_numeric 2194 0.05 0.55 1.05 0 0.00 0.0 1.00 4 ▇▂▁▁▁
ocir.arranged_things_prepan_numeric 2194 0.05 1.57 1.27 0 1.00 1.0 2.75 4 ▅▇▃▃▂
ocir.good_feel_bad_numbers_prepan_numeric 2194 0.05 0.95 1.28 0 0.00 0.0 1.00 4 ▇▃▁▂▁
ocir.hands_longer_wash_prepan_numeric 2194 0.05 0.70 1.15 0 0.00 0.0 1.00 4 ▇▂▁▁▁
ocir.saved_things_prepan_numeric 2194 0.05 1.17 1.19 0 0.00 1.0 2.00 4 ▇▅▃▃▁
ocir.frequently_difficulty_rid_nasty_prepan_numeric 2194 0.05 1.52 1.37 0 0.00 1.0 3.00 4 ▇▅▃▅▂
ocir.i_check_things_more_often_than_necessary_prepan_numeric 2194 0.05 1.57 1.22 0 1.00 1.0 2.00 4 ▆▇▆▅▂
ocir.arranged_properly_objects_upset_prepan_numeric 2194 0.05 1.64 1.23 0 1.00 1.0 2.00 4 ▃▇▅▂▂
ocir.feel_compelled_count_things_prepan_numeric 2194 0.05 0.95 1.26 0 0.00 0.0 1.00 4 ▇▃▁▂▁
ocir.strangers_touch_touched_difficult_prepan_numeric 2194 0.05 0.81 1.10 0 0.00 0.0 1.00 4 ▇▃▂▁▁
ocir.control_difficult_find_thoughts_prepan_numeric 2194 0.05 2.15 1.31 0 1.00 2.0 3.00 4 ▃▆▅▇▅
ocir.i_collect_things_i_dont_need_prepan_numeric 2194 0.05 0.67 0.87 0 0.00 0.0 1.00 4 ▇▆▁▁▁
ocir.sum_score_prepan_raw 2192 0.05 20.25 13.74 0 10.00 18.0 28.00 65 ▇▇▅▁▁
na_per_person_ocir_prepan 2192 0.05 0.32 2.39 0 0.00 0.0 0.00 18 ▇▁▁▁▁
ocir.sum_score_prepan 2194 0.05 20.62 13.59 0 10.00 18.0 28.00 65 ▇▇▅▁▁
gad.problems_made_difficult_care_numeric 1791 0.22 2.19 0.81 1 2.00 2.0 3.00 4 ▂▇▁▂▁
gad.pandemic_felt_feelings_numeric 1771 0.23 2.32 0.96 1 2.00 2.0 3.00 5 ▃▇▃▂▁
gad.feeling_nervous_anxious_or_on_edge_retro_numeric 1885 0.18 1.47 0.89 0 1.00 1.0 2.00 3 ▂▇▁▃▃
gad.control_worrying_stop_retro_numeric 1885 0.18 1.30 0.95 0 1.00 1.0 2.00 3 ▃▇▁▅▂
gad.worrying_too_much_about_different_things_retro_numeric 1885 0.18 1.40 0.97 0 1.00 1.0 2.00 3 ▃▇▁▃▃
gad.trouble_relaxing_retro_numeric 1885 0.18 1.30 1.01 0 1.00 1.0 2.00 3 ▅▇▁▃▃
gad.sit_restless_hard_retro_numeric 1885 0.18 0.81 0.98 0 0.00 1.0 1.00 3 ▇▅▁▂▂
gad.becoming_easily_annoyed_or_irritable_retro_numeric 1885 0.18 1.11 0.90 0 0.50 1.0 1.00 3 ▃▇▁▂▂
gad.awful_feeling_afraid_happen_retro_numeric 1885 0.18 0.93 0.97 0 0.00 1.0 1.00 3 ▇▇▁▂▂
gad.feeling_nervous_anxious_or_on_edge_base_numeric 1771 0.23 1.78 0.99 0 1.00 2.0 3.00 3 ▂▇▁▅▇
gad.control_worrying_stop_base_numeric 1771 0.23 1.65 1.07 0 1.00 2.0 3.00 3 ▅▇▁▇▇
gad.worrying_too_much_about_different_things_base_numeric 1771 0.23 1.72 1.06 0 1.00 2.0 3.00 3 ▃▇▁▆▇
gad.trouble_relaxing_base_numeric 1772 0.23 1.79 1.07 0 1.00 2.0 3.00 3 ▃▆▁▅▇
gad.sit_restless_hard_base_numeric 1771 0.23 1.13 1.12 0 0.00 1.0 2.00 3 ▇▆▁▃▃
gad.becoming_easily_annoyed_or_irritable_base_numeric 1771 0.23 1.51 1.03 0 1.00 1.0 2.00 3 ▃▇▁▆▅
gad.awful_feeling_afraid_happen_base_numeric 1771 0.23 1.33 1.13 0 0.00 1.0 2.00 3 ▇▇▁▅▆
gad.sum_score_retro_raw 1771 0.23 6.53 5.77 0 1.00 6.0 11.00 21 ▇▅▃▂▂
gad.sum_score_base_raw 1771 0.23 10.91 6.03 0 6.00 11.0 16.00 21 ▆▇▇▇▇
na_per_person_gad_base 1771 0.23 0.00 0.04 0 0.00 0.0 0.00 1 ▇▁▁▁▁
na_per_person_gad_retro 1771 0.23 1.50 2.87 0 0.00 0.0 0.00 7 ▇▁▁▁▂
gad.sum_score_base 1772 0.23 10.92 6.03 0 6.00 11.0 16.00 21 ▆▇▇▇▇
gad.sum_score_retro 1885 0.18 8.31 5.25 0 4.00 7.0 12.00 21 ▇▇▅▃▂
pcl.stressful_experience_repeated_images_base_numeric 1773 0.23 2.61 1.38 1 1.00 2.0 4.00 5 ▇▇▃▆▃
pcl.stressful_experience_upset_reminded_base_numeric 1772 0.23 2.82 1.36 1 2.00 3.0 4.00 5 ▇▇▆▇▅
pcl.stressful_situation_avoiding_activities_base_numeric 1772 0.23 2.29 1.38 1 1.00 2.0 3.00 5 ▇▃▃▂▂
pcl.cut_people_feeling_distant_base_numeric 1771 0.23 3.43 1.37 1 2.00 4.0 5.00 5 ▃▅▅▇▇
pcl.feeling_irritable_or_having_angry_outbursts_base_numeric 1772 0.23 2.66 1.25 1 2.00 3.0 4.00 5 ▆▇▇▅▃
pcl.difficulty_concentrating_base_numeric 1771 0.23 3.20 1.30 1 2.00 3.0 4.00 5 ▃▆▆▇▆
pcl.stressful_experience_repeated_images_retro_numeric 1921 0.17 0.16 0.36 0 0.00 0.0 0.00 1 ▇▁▁▁▂
pcl.stressful_experience_upset_reminded_retro_numeric 1885 0.18 0.20 0.40 0 0.00 0.0 0.00 1 ▇▁▁▁▂
pcl.stressful_situation_avoiding_activities_retro_numeric 1989 0.14 0.20 0.40 0 0.00 0.0 0.00 1 ▇▁▁▁▂
pcl.cut_people_feeling_distant_retro_numeric 1831 0.21 0.69 0.46 0 0.00 1.0 1.00 1 ▃▁▁▁▇
pcl.feeling_irritable_or_having_angry_outbursts_retro_numeric 1883 0.18 0.45 0.50 0 0.00 0.0 1.00 1 ▇▁▁▁▆
pcl.difficulty_concentrating_retro_numeric 1833 0.20 0.43 0.50 0 0.00 0.0 1.00 1 ▇▁▁▁▆
pcl.sum_score_retro_raw 1771 0.23 1.74 1.60 0 0.00 2.0 3.00 6 ▇▃▂▂▁
pcl.sum_score_base_raw 1771 0.23 16.98 6.08 6 12.00 17.0 21.00 30 ▅▆▇▅▂
na_per_person_pcl_base 1771 0.23 0.01 0.14 0 0.00 0.0 0.00 3 ▇▁▁▁▁
na_per_person_pcl_retro 1771 0.23 1.34 1.66 0 0.00 1.0 2.00 6 ▇▁▁▁▁
pcl.sum_score_base 1774 0.23 17.01 6.09 6 12.00 17.0 21.00 30 ▅▆▇▅▂
pcl.sum_score_retro 2064 0.10 2.13 1.79 0 0.00 2.0 3.00 6 ▇▅▃▂▂
phq.problems_made_difficult_care_numeric 1777 0.23 2.21 0.81 1 2.00 2.0 3.00 4 ▂▇▁▂▁
phq.pandemic_felt_feelings_numeric 1771 0.23 2.25 0.92 1 2.00 2.0 3.00 5 ▂▇▂▂▁
phq.little_interest_or_pleasure_in_doing_things_retro_numeric 1864 0.19 1.09 0.89 0 0.00 1.0 2.00 3 ▅▇▁▃▂
phq.feeling_down_depressed_or_hopeless_retro_numeric 1864 0.19 1.32 0.90 0 1.00 1.0 2.00 3 ▂▇▁▃▂
phq.staying_asleep_sleeping_trouble_retro_numeric 1864 0.19 1.18 1.01 0 0.00 1.0 2.00 3 ▆▇▁▃▃
phq.feeling_tired_or_having_little_energy_retro_numeric 1864 0.19 1.40 0.96 0 1.00 1.0 2.00 3 ▃▇▁▃▃
phq.poor_appetite_or_overeating_retro_numeric 1866 0.19 1.30 1.08 0 0.00 1.0 2.00 3 ▇▇▁▅▅
phq.feeling_bad_failure_family_retro_numeric 1864 0.19 1.44 1.01 0 1.00 1.0 2.00 3 ▃▇▁▅▅
phq.trouble_concentrating_reading_newspaper_retro_numeric 1864 0.19 1.13 0.94 0 0.00 1.0 2.00 3 ▆▇▁▅▂
phq.moving_fidgety_noticed_opposite_retro_numeric 1864 0.19 0.45 0.77 0 0.00 0.0 1.00 3 ▇▂▁▁▁
phq.dead_hurting_thoughts_retro_numeric 1864 0.19 0.76 0.95 0 0.00 0.0 1.00 3 ▇▅▁▂▁
phq.little_interest_or_pleasure_in_doing_things_base_numeric 1772 0.23 1.48 1.00 0 1.00 1.0 2.00 3 ▃▇▁▃▅
phq.feeling_down_depressed_or_hopeless_base_numeric 1772 0.23 1.57 1.00 0 1.00 1.0 2.00 3 ▂▇▁▅▅
phq.staying_asleep_sleeping_trouble_base_numeric 1772 0.23 1.79 1.07 0 1.00 2.0 3.00 3 ▃▆▁▆▇
phq.feeling_tired_or_having_little_energy_base_numeric 1772 0.23 1.86 0.98 0 1.00 2.0 3.00 3 ▂▇▁▆▇
phq.poor_appetite_or_overeating_base_numeric 1773 0.23 1.60 1.14 0 1.00 2.0 3.00 3 ▆▇▁▆▇
phq.feeling_bad_failure_family_base_numeric 1772 0.23 1.72 1.08 0 1.00 2.0 3.00 3 ▃▇▁▆▇
phq.trouble_concentrating_reading_newspaper_base_numeric 1772 0.23 1.59 1.06 0 1.00 1.0 3.00 3 ▅▇▁▆▆
phq.moving_fidgety_noticed_opposite_base_numeric 1772 0.23 0.64 0.91 0 0.00 0.0 1.00 3 ▇▃▁▂▁
phq.dead_hurting_thoughts_base_numeric 1772 0.23 0.87 1.05 0 0.00 1.0 1.00 3 ▇▅▁▂▂
phq.sum_score_retro_raw 1771 0.23 8.32 6.82 0 2.00 7.0 13.00 27 ▇▅▅▂▁
phq.sum_score_base_raw 1771 0.23 13.08 6.76 0 8.00 12.0 19.00 27 ▃▇▇▅▃
na_per_person_phq_retro 1771 0.23 1.57 3.42 0 0.00 0.0 0.00 9 ▇▁▁▁▂
phq.missing_only_suicide_item_retro 1771 0.23 0.00 0.00 0 0.00 0.0 0.00 0 ▁▁▇▁▁
na_per_person_phq_base 1771 0.23 0.02 0.39 0 0.00 0.0 0.00 9 ▇▁▁▁▁
phq.missing_only_suicide_item_base 1771 0.23 0.00 0.00 0 0.00 0.0 0.00 0 ▁▁▇▁▁
phq.sum_score_base 1773 0.23 13.11 6.75 0 8.00 12.0 19.00 27 ▃▇▇▅▃
phq.sum_score_8items_base 1771 0.23 13.08 6.76 0 8.00 12.0 19.00 27 ▃▇▇▅▃
phq.sum_score_retro 1866 0.19 10.10 6.21 0 5.00 9.0 14.00 27 ▇▇▇▃▂
phq.sum_score_8items_retro 1771 0.23 8.32 6.82 0 2.00 7.0 13.00 27 ▇▅▅▂▁
alsfrs.limb_weakness_noticed_past_numeric 1773 0.23 0.20 0.40 0 0.00 0.0 0.00 1 ▇▁▁▁▂
alsfrs.normal_numeric 2200 0.05 0.73 0.45 0 0.00 1.0 1.00 1 ▃▁▁▁▇
alsfrs.slow_or_sloppy_all_words_are_legible_numeric 2200 0.05 0.20 0.40 0 0.00 0.0 0.00 1 ▇▁▁▁▂
alsfrs.not_all_words_are_legible_numeric 2200 0.05 0.05 0.21 0 0.00 0.0 0.00 1 ▇▁▁▁▁
alsfrs.able_to_grip_pen_numeric 2200 0.05 0.02 0.14 0 0.00 0.0 0.00 1 ▇▁▁▁▁
alsfrs.unable_to_grip_pen_numeric 2200 0.05 0.04 0.19 0 0.00 0.0 0.00 1 ▇▁▁▁▁
alsfrs.have_you_noticed_any_difficulty_walking_numeric 2200 0.05 0.47 0.72 0 0.00 0.0 1.00 4 ▇▃▁▁▁
alsfrs.do_you_have_any_difficulty_climbing_stairs_numeric 2199 0.05 0.87 1.06 0 0.00 0.0 2.00 4 ▇▂▃▁▁
ess.felt_excessively_sleepy_past_numeric 1775 0.23 0.57 0.50 0 0.00 1.0 1.00 1 ▆▁▁▁▇
ess.sitting_and_reading_numeric 2001 0.13 1.21 0.92 0 1.00 1.0 2.00 3 ▅▇▁▅▂
ess.watching_tv_numeric 2001 0.13 1.31 0.94 0 1.00 1.0 2.00 3 ▃▇▁▅▂
ess.sitting_inactive_in_a_public_place_numeric 2002 0.13 0.53 0.82 0 0.00 0.0 1.00 3 ▇▃▁▁▁
ess.break_passenger_car_hour_numeric 2001 0.13 1.42 1.07 0 1.00 1.0 2.00 3 ▆▇▁▆▅
ess.afternoon_rest_circumstances_lying_numeric 2001 0.13 2.05 0.99 0 1.00 2.0 3.00 3 ▂▅▁▅▇
ess.sitting_and_talking_to_someone_numeric 2001 0.13 0.16 0.49 0 0.00 0.0 0.00 3 ▇▁▁▁▁
ess.sitting_quietly_after_a_lunch_without_alcohol_numeric 2002 0.13 0.80 0.94 0 0.00 1.0 1.00 3 ▇▅▁▂▁
ess.car_minutes_stopped_traffic_numeric 2001 0.13 0.29 0.73 0 0.00 0.0 0.00 3 ▇▁▁▁▁
ess.insomnia_numeric 1779 0.23 0.13 0.33 0 0.00 0.0 0.00 1 ▇▁▁▁▁
ess.narcolepsy_numeric 1779 0.23 0.00 0.00 0 0.00 0.0 0.00 0 ▁▁▇▁▁
ess.rem_sleep_behaviour_disorder_numeric 1779 0.23 0.00 0.04 0 0.00 0.0 0.00 1 ▇▁▁▁▁
ess.restless_legs_syndrome_numeric 1779 0.23 0.04 0.20 0 0.00 0.0 0.00 1 ▇▁▁▁▁
ess.sleep_apnea_numeric 1779 0.23 0.01 0.08 0 0.00 0.0 0.00 1 ▇▁▁▁▁
ess.sleep_terrors_numeric 1779 0.23 0.04 0.19 0 0.00 0.0 0.00 1 ▇▁▁▁▁
ess.sleepwalking_numeric 1779 0.23 0.01 0.11 0 0.00 0.0 0.00 1 ▇▁▁▁▁
ess.other_numeric 1779 0.23 0.02 0.12 0 0.00 0.0 0.00 1 ▇▁▁▁▁
ess.none_numeric 1779 0.23 0.82 0.38 0 1.00 1.0 1.00 1 ▂▁▁▁▇
midas.headaches_suffered_past_month_numeric 1773 0.23 0.48 0.50 0 0.00 0.0 1.00 1 ▇▁▁▁▇
midas.days_past_month_miss_work_school_numeric 2083 0.10 1.38 3.57 0 0.00 0.0 1.00 25 ▇▁▁▁▁
midas.days_past_month_work_school_half_productivity_numeric 2080 0.10 4.54 6.13 0 0.00 2.0 6.00 31 ▇▁▁▁▁
midas.days_past_month_miss_housework_numeric 2077 0.10 4.96 5.98 0 0.00 3.0 6.00 31 ▇▁▁▁▁
midas.days_past_month_housework_half_productivity_numeric 2072 0.10 5.58 6.52 0 0.00 3.0 9.00 31 ▇▂▁▁▁
midas.days_past_month_miss_social_activities_numeric 2089 0.09 3.56 5.49 0 0.00 1.0 5.00 31 ▇▁▁▁▁
nmss.ability_taste_food_smell_numeric 1773 0.23 0.07 0.25 0 0.00 0.0 0.00 1 ▇▁▁▁▁
nmss.severe_taste_smell_loss_numeric 2267 0.02 1.84 1.26 0 1.00 2.0 2.00 5 ▇▇▂▂▁
nmsw.drink_problems_choking_difficulty_numeric 1773 0.23 0.08 0.28 0 0.00 0.0 0.00 1 ▇▁▁▁▁
nmsw.regularly_night_pass_urine_numeric 1773 0.23 0.34 0.48 0 0.00 0.0 1.00 1 ▇▁▁▁▅
nmsw.sex_difficult_finding_numeric 1778 0.23 0.08 0.27 0 0.00 0.0 0.00 1 ▇▁▁▁▁
nmsw.weak_standing_feeling_light_numeric 1773 0.23 0.57 0.50 0 0.00 1.0 1.00 1 ▆▁▁▁▇
nmsw.acting_moving_sleep_talking_numeric 1774 0.23 0.16 0.37 0 0.00 0.0 0.00 1 ▇▁▁▁▂
nmsw.double_vision_numeric 1773 0.23 0.09 0.29 0 0.00 0.0 0.00 1 ▇▁▁▁▁
tinnitus.ears_noises_minutes_head_numeric 1773 0.23 0.19 0.39 0 0.00 0.0 0.00 1 ▇▁▁▁▂
tinnitus.ears_noises_minutes_head_frequency_numeric 2202 0.04 2.43 0.92 0 2.00 2.0 3.00 4 ▁▁▇▃▂
tinnitus.noises_worry_worst_upset_numeric 2202 0.04 1.28 0.76 0 1.00 1.0 2.00 3 ▂▇▁▅▁

Variable type: POSIXct

skim_variable n_missing complete_rate min max median n_unique
startDate.prepandemic 0 1.00 2020-02-26 00:14:17 2020-09-29 10:33:37 2020-03-06 22:11:27 2301
startDate.coping 1771 0.23 2020-05-04 17:36:38 2020-09-06 16:44:11 2020-05-07 17:53:31 524

Check duplicates again to be saved +++KLP: RAMP: More than one column: Age, Sex, Login ID; if they match on all 3 then we treat them as a duplicate; otherwise we are going to rename the Login ID +++KT: No duplicates identified by ID in GLAD. +++MD: Duplicates have been removed in cleaning script for NBR. No duplicates at this stage.

FALSE 
 2304 

#Exclusion Exclude those without sex, gender, age and incomplete PHQ/GAD items Create a new new object for each exclusion step, e.g., data.no_sex, data.no_gender and data.no_sex.no_age

[1] "N = 99 were excluded because they did not report their sex"
[1] 2205  495
[1] 2186  495
[1] 19

19 were excluded because they did not report their sex

[1] 2186  495
[1] 2186  495
[1] 0

dim(dat.no.sex.no.gender)[1]-dim(dat.no.sex.no.gender.no.age)[1] were excluded because they did not report their age

Exclusion of inflammatory bowel disease (IBD) and GLAD BioResource (NBR) cohort ++MD: 3,410 participants from NBR IBD cohort excluded ++KT: 3 duplicated GLAD participants are excluded

##Create tidy data on which the exclusion criteria have been applied Complete sex, gender, age and missingness information applied.

Data summary
Name dat
Number of rows 2186
Number of columns 495
_______________________
Column type frequency:
character 5
factor 219
logical 1
numeric 268
POSIXct 2
________________________
Group variables None

Variable type: character

skim_variable n_missing complete_rate min max empty n_unique whitespace
Sample 0 1.00 4 4 0 1 0
COPING_ID 1659 0.24 9 24 0 527 0
personality_cluster_a 2186 0.00 NA NA 0 0 0
personality_cluster_b 2186 0.00 NA NA 0 0 0
personality_cluster_c 2186 0.00 NA NA 0 0 0

Variable type: factor

skim_variable n_missing complete_rate ordered n_unique top_counts
Gender_unc 0 1.00 FALSE 4 Fem: 2088, Mal: 54, Non: 36, Pre: 8
Sex 0 1.00 FALSE 2 Fem: 2145, Mal: 41
demographics.college_or_university_degree 16 0.99 FALSE 2 Not: 1122, Col: 1048
demographics.a_levelsas_levels_or_equivalent 16 0.99 FALSE 2 A l: 1581, Not: 589
demographics.o_levelsgcses_or_equivalent 16 0.99 FALSE 2 O l: 1709, Not: 461
demographics.cses_or_equivalent 16 0.99 FALSE 2 Not: 2101, CSE: 69
demographics.nvq_or_hnd_or_hnc_or_equivalent 16 0.99 FALSE 2 Not: 1913, NVQ: 257
Ethnicity_unc 18 0.99 FALSE 6 Whi: 2032, Mix: 69, Asi: 37, Oth: 23
Gender 0 1.00 FALSE 4 Fem: 2088, Mal: 54, Non: 36, Pre: 8
Ethnicity 18 0.99 FALSE 6 Whi: 2032, Mix: 69, Asi: 37, Oth: 23
age_category 0 1.00 FALSE 8 19-: 914, 26-: 538, 16-: 363, 36-: 199
highest_education_prepan 67 0.97 FALSE 4 Uni: 1048, A-l: 718, GCS: 287, NVQ: 66
employment.phd 1659 0.24 FALSE 2 Not: 514, PhD: 13
employment.masters_degree_or_equivalent 1659 0.24 FALSE 2 Not: 459, Mas: 68
employment.postgraduate_degree_or_equivalent 1659 0.24 FALSE 2 Not: 471, Pos: 56
employment.bachelors_degree_or_equivalent 1659 0.24 FALSE 2 Not: 292, Bac: 235
employment.a_levelsas_levels_or_equivalent 1659 0.24 FALSE 2 A l: 368, Not: 159
employment.o_levelsgcses_or_equivalent 1659 0.24 FALSE 2 O l: 412, Not: 115
employment.cses_or_equivalent 1659 0.24 FALSE 2 Not: 510, CSE: 17
employment.nvq_or_hnd_or_hnc_or_equivalent 1659 0.24 FALSE 2 Not: 455, NVQ: 72
employment.government_work_key_workers 1869 0.15 FALSE 10 Non: 133, Hea: 74, Edu: 49, Oth: 24
employment.unemployed 1659 0.24 FALSE 2 Not: 468, Une: 59
employment.zerohours_contract 1659 0.24 FALSE 2 Not: 511, Zer: 16
employment.stayathome_parent_or_carer 1659 0.24 FALSE 2 Not: 514, Sta: 13
employment.retired 1659 0.24 FALSE 2 Not: 510, Ret: 17
employment.student_gcse_or_a_level 1659 0.24 FALSE 2 Not: 449, Stu: 78
employment.student_university 1659 0.24 FALSE 2 Not: 424, Stu: 103
employment.became_unemployed 1793 0.18 FALSE 2 Not: 368, Bec: 25
employment.furloughed_or_paid_leave_government_funded 1793 0.18 FALSE 2 Not: 342, Fur: 51
employment.furloughed_or_paid_leave_company_funded 1793 0.18 FALSE 2 Not: 383, Fur: 10
employment.paid_leave_furloughed 1793 0.18 FALSE 2 Not: 376, Fur: 17
highest_education 1669 0.24 FALSE 4 Uni: 264, A-l: 165, GCS: 71, NVQ: 17
key_worker 1659 0.24 FALSE 2 No : 343, Key: 184
ocir.felt_pandemic_feelings 2045 0.06 FALSE 4 A l: 67, No : 59, Muc: 12, A l: 3
ocir.i_repeatedly_check_doors_windows_drawers_etc_retro 2045 0.06 FALSE 5 Not: 87, A l: 29, Mod: 12, A l: 9
ocir.arranged_things_change_upset_retro 2045 0.06 FALSE 5 A l: 36, Not: 32, Ext: 27, A l: 24
ocir.repeat_feel_numbers_retro 2045 0.06 FALSE 5 Not: 91, A l: 18, Mod: 16, A l: 8
ocir.clean_simply_wash_feel_retro 2045 0.06 FALSE 5 Not: 64, A l: 29, Mod: 21, A l: 16
ocir.mind_upset_unpleasant_thoughts_retro 2045 0.06 FALSE 5 Ext: 35, Mod: 29, A l: 29, A l: 27
ocir.afraid_avoid_throwing_things_retro 2045 0.06 FALSE 5 Not: 63, A l: 38, Mod: 20, A l: 17
ocir.light_switches_water_taps_retro 2045 0.06 FALSE 5 Not: 104, A l: 16, Mod: 12, A l: 5
ocir.arranged_things_retro 2045 0.06 FALSE 5 A l: 42, Not: 40, Mod: 23, A l: 19
ocir.good_feel_bad_numbers_retro 2045 0.06 FALSE 5 Not: 78, A l: 18, A l: 16, Ext: 15
ocir.hands_longer_wash_retro 2045 0.06 FALSE 5 Not: 90, A l: 15, Ext: 13, Mod: 12
ocir.saved_things_retro 2045 0.06 FALSE 5 Not: 86, A l: 24, Mod: 17, A l: 10
ocir.frequently_difficulty_rid_nasty_retro 2045 0.06 FALSE 5 A l: 33, Not: 31, Ext: 30, Mod: 26
ocir.i_check_things_more_often_than_necessary_retro 2045 0.06 FALSE 5 A l: 42, Not: 37, Mod: 29, A l: 21
ocir.arranged_properly_objects_upset_retro 2045 0.06 FALSE 5 Not: 41, A l: 34, Mod: 29, Ext: 20
ocir.feel_compelled_count_things_retro 2045 0.06 FALSE 5 Not: 71, A l: 33, Mod: 15, A l: 11
ocir.strangers_touch_touched_difficult_retro 2045 0.06 FALSE 5 Not: 55, A l: 31, Ext: 21, Mod: 20
ocir.control_difficult_find_thoughts_retro 2045 0.06 FALSE 5 Ext: 46, A l: 30, A l: 29, Mod: 28
ocir.i_collect_things_i_dont_need_retro 2045 0.06 FALSE 5 Not: 84, A l: 31, Mod: 15, A l: 7
ocir.i_repeatedly_check_doors_windows_drawers_etc_base 2104 0.04 FALSE 5 Not: 57, A l: 16, Mod: 5, A l: 2
ocir.arranged_things_change_upset_base 2104 0.04 FALSE 5 A l: 27, Not: 25, Mod: 16, Ext: 9
ocir.repeat_feel_numbers_base 2104 0.04 FALSE 5 Not: 58, A l: 12, Mod: 7, A l: 3
ocir.clean_simply_wash_feel_base 2104 0.04 FALSE 5 Not: 50, A l: 15, Mod: 10, A l: 5
ocir.mind_upset_unpleasant_thoughts_base 2104 0.04 FALSE 5 A l: 24, Mod: 19, A l: 14, Not: 13
ocir.afraid_avoid_throwing_things_base 2104 0.04 FALSE 5 Not: 42, A l: 24, Mod: 12, A l: 3
ocir.light_switches_water_taps_base 2104 0.04 FALSE 5 Not: 60, A l: 14, Mod: 4, Ext: 3
ocir.arranged_things_base 2104 0.04 FALSE 5 A l: 29, Not: 27, Mod: 14, Ext: 7
ocir.good_feel_bad_numbers_base 2104 0.04 FALSE 5 Not: 51, A l: 14, Mod: 7, Ext: 6
ocir.hands_longer_wash_base 2104 0.04 FALSE 5 Not: 50, A l: 18, Mod: 7, A l: 5
ocir.saved_things_base 2104 0.04 FALSE 4 Not: 57, A l: 16, A l: 5, Mod: 4
ocir.frequently_difficulty_rid_nasty_base 2104 0.04 FALSE 5 Mod: 22, Not: 18, A l: 18, A l: 13
ocir.i_check_things_more_often_than_necessary_base 2104 0.04 FALSE 5 Not: 35, A l: 29, Mod: 12, A l: 3
ocir.arranged_properly_objects_upset_base 2104 0.04 FALSE 5 Not: 29, A l: 27, Mod: 14, A l: 6
ocir.feel_compelled_count_things_base 2104 0.04 FALSE 5 Not: 49, A l: 13, Mod: 8, A l: 8
ocir.strangers_touch_touched_difficult_base 2104 0.04 FALSE 5 Not: 45, A l: 14, A l: 10, Mod: 9
ocir.control_difficult_find_thoughts_base 2104 0.04 FALSE 5 Mod: 25, A l: 18, A l: 17, Ext: 13
ocir.i_collect_things_i_dont_need_base 2104 0.04 FALSE 5 Not: 46, A l: 20, Mod: 12, A l: 3
anxiety_disorders 38 0.98 FALSE 2 Anx: 1318, No : 830
mhd.specific_phobia_e.g._phobia_of_flying 38 0.98 FALSE 2 Not: 2075, Spe: 73
mhd.social_anxiety_or_social_phobia 38 0.98 FALSE 2 Not: 1791, Soc: 357
agoraphobia_panic_disorder 38 0.98 FALSE 2 No : 1578, Ago: 570
depressive_disorders 38 0.98 FALSE 2 Dep: 1413, No : 735
eating_disorders 79 0.96 FALSE 2 Eat: 1702, No : 405
obsessive_compulsive_disorders 38 0.98 FALSE 2 No : 1555, Obs: 593
psychotic_disorders 60 0.97 FALSE 2 No : 2076, Psy: 50
mhd.mania_hypomania_bipolar_or_manicdepression 38 0.98 FALSE 2 Not: 2064, Man: 84
mhd.posttraumatic_stress_disorder_ptsd 38 0.98 FALSE 2 Not: 1886, Pos: 262
autism_spectrum_disorder 60 0.97 FALSE 2 No : 2023, Aut: 103
mhd.attention_deficit_hyperactivity_disorder 60 0.97 FALSE 2 Not: 2064, Att: 62
mhd.personality_disorder 60 0.97 FALSE 2 Not: 1886, Per: 240
depression_and_anxiety 38 0.98 FALSE 4 Dep: 1094, No : 511, Onl: 319, Onl: 224
restricting_vs_binge_eating_eating_disorders 79 0.96 FALSE 3 Ano: 1389, No : 405, Eat: 313
bipolar_and_schizophrenia 65 0.97 FALSE 4 No : 2004, Onl: 67, Onl: 33, Psy: 17
control 39 0.98 FALSE 2 No : 2071, Con: 76
comorbidity_total_count_factor 252 0.88 FALSE 4 3+ : 621, 2 c: 528, 1 c: 412, No : 373
gad.feeling_nervous_anxious_or_on_edge_prepan 2080 0.05 FALSE 4 Sev: 35, Nea: 34, Mor: 21, Not: 16
gad.control_worrying_stop_prepan 2080 0.05 FALSE 4 Nea: 32, Sev: 29, Not: 26, Mor: 19
gad.worrying_too_much_about_different_things_prepan 2080 0.05 FALSE 4 Nea: 33, Sev: 31, Mor: 23, Not: 19
gad.trouble_relaxing_prepan 2080 0.05 FALSE 4 Nea: 37, Sev: 31, Mor: 22, Not: 16
gad.sit_restless_hard_prepan 2080 0.05 FALSE 4 Not: 46, Sev: 31, Mor: 15, Nea: 14
gad.becoming_easily_annoyed_or_irritable_prepan 2080 0.05 FALSE 4 Sev: 49, Not: 24, Mor: 21, Nea: 12
gad.awful_feeling_afraid_happen_prepan 2080 0.05 FALSE 4 Not: 40, Sev: 28, Mor: 22, Nea: 16
pcl.stressful_experience_repeated_images_prepan 197 0.91 FALSE 5 Not: 484, Qui: 482, A l: 450, Mod: 299
pcl.stressful_experience_upset_reminded_prepan 199 0.91 FALSE 5 Qui: 540, Ext: 410, A l: 385, Mod: 365
pcl.stressful_situation_avoiding_activities_prepan 202 0.91 FALSE 5 Not: 518, A l: 446, Qui: 390, Mod: 328
pcl.cut_people_feeling_distant_prepan 197 0.91 FALSE 5 Ext: 648, Qui: 524, Mod: 325, A l: 311
pcl.feeling_irritable_or_having_angry_outbursts_prepan 197 0.91 FALSE 5 Qui: 533, A l: 432, Mod: 379, Ext: 374
pcl.difficulty_concentrating_prepan 202 0.91 FALSE 5 Qui: 586, Ext: 561, Mod: 351, A l: 346
phq.little_interest_or_pleasure_in_doing_things_prepan 2080 0.05 FALSE 4 Sev: 32, Not: 29, Nea: 23, Mor: 22
phq.feeling_down_depressed_or_hopeless_prepan 2080 0.05 FALSE 4 Sev: 44, Nea: 25, Not: 20, Mor: 17
phq.staying_asleep_sleeping_trouble_prepan 2080 0.05 FALSE 4 Not: 30, Nea: 29, Mor: 24, Sev: 23
phq.feeling_tired_or_having_little_energy_prepan 2080 0.05 FALSE 4 Nea: 42, Sev: 25, Mor: 20, Not: 19
phq.poor_appetite_or_overeating_prepan 2080 0.05 FALSE 4 Not: 37, Nea: 26, Mor: 22, Sev: 21
phq.feeling_bad_failure_family_prepan 2080 0.05 FALSE 4 Nea: 39, Sev: 28, Not: 21, Mor: 18
phq.trouble_concentrating_reading_newspaper_prepan 2080 0.05 FALSE 4 Not: 36, Sev: 28, Mor: 21, Nea: 21
phq.moving_fidgety_noticed_opposite_prepan 2080 0.05 FALSE 4 Not: 66, Sev: 24, Mor: 10, Nea: 6
phq.dead_hurting_thoughts_prepan 2080 0.05 FALSE 4 Not: 43, Sev: 32, Nea: 18, Mor: 13
ocir.i_repeatedly_check_doors_windows_drawers_etc_prepan 2080 0.05 FALSE 5 Not: 61, A l: 26, Mod: 11, A l: 4
ocir.arranged_things_change_upset_prepan 2080 0.05 FALSE 5 A l: 43, Mod: 21, Not: 17, Ext: 14
ocir.repeat_feel_numbers_prepan 2080 0.05 FALSE 5 Not: 79, A l: 12, Mod: 6, A l: 5
ocir.clean_simply_wash_feel_prepan 2080 0.05 FALSE 5 Not: 58, A l: 26, Mod: 11, A l: 9
ocir.mind_upset_unpleasant_thoughts_prepan 2080 0.05 FALSE 5 Not: 26, A l: 25, Mod: 21, A l: 20
ocir.afraid_avoid_throwing_things_prepan 2080 0.05 FALSE 5 Not: 42, A l: 40, Mod: 15, A l: 8
ocir.light_switches_water_taps_prepan 2080 0.05 FALSE 5 Not: 76, A l: 15, Mod: 7, A l: 4
ocir.arranged_things_prepan 2080 0.05 FALSE 5 A l: 42, Not: 22, Mod: 15, A l: 15
ocir.good_feel_bad_numbers_prepan 2080 0.05 FALSE 5 Not: 58, A l: 22, A l: 10, Mod: 8
ocir.hands_longer_wash_prepan 2080 0.05 FALSE 5 Not: 70, A l: 18, A l: 10, Mod: 6
ocir.saved_things_prepan 2080 0.05 FALSE 5 Not: 42, A l: 27, Mod: 17, A l: 17
ocir.frequently_difficulty_rid_nasty_prepan 2080 0.05 FALSE 5 Not: 36, A l: 23, A l: 21, Mod: 17
ocir.i_check_things_more_often_than_necessary_prepan 2080 0.05 FALSE 5 A l: 33, Mod: 24, Not: 23, A l: 18
ocir.arranged_properly_objects_upset_prepan 2080 0.05 FALSE 5 A l: 43, Mod: 21, Not: 17, Ext: 14
ocir.feel_compelled_count_things_prepan 2080 0.05 FALSE 5 Not: 57, A l: 25, A l: 12, Mod: 6
ocir.strangers_touch_touched_difficult_prepan 2080 0.05 FALSE 5 Not: 58, A l: 27, Mod: 12, A l: 6
ocir.control_difficult_find_thoughts_prepan 2080 0.05 FALSE 5 A l: 33, A l: 24, Mod: 17, Ext: 17
ocir.i_collect_things_i_dont_need_prepan 2080 0.05 FALSE 5 Not: 55, A l: 37, Mod: 8, A l: 5
gad.problems_made_difficult_care 1679 0.23 FALSE 4 Som: 288, Ver: 96, Not: 82, Ext: 41
gad.pandemic_felt_feelings 1659 0.24 FALSE 5 A l: 258, No : 110, Muc: 92, A l: 53
gad.feeling_nervous_anxious_or_on_edge_retro 1770 0.19 FALSE 4 Sev: 206, Mor: 99, Nea: 70, Not: 41
gad.control_worrying_stop_retro 1770 0.19 FALSE 4 Sev: 179, Mor: 95, Not: 85, Nea: 57
gad.worrying_too_much_about_different_things_retro 1770 0.19 FALSE 4 Sev: 183, Mor: 88, Nea: 74, Not: 71
gad.trouble_relaxing_retro 1770 0.19 FALSE 4 Sev: 172, Not: 96, Mor: 76, Nea: 72
gad.sit_restless_hard_retro 1770 0.19 FALSE 4 Not: 206, Sev: 121, Mor: 48, Nea: 41
gad.becoming_easily_annoyed_or_irritable_retro 1770 0.19 FALSE 4 Sev: 210, Not: 104, Mor: 59, Nea: 43
gad.awful_feeling_afraid_happen_retro 1770 0.19 FALSE 4 Not: 169, Sev: 150, Mor: 56, Nea: 41
gad.feeling_nervous_anxious_or_on_edge_base 1659 0.24 FALSE 4 Sev: 190, Nea: 168, Mor: 122, Not: 47
gad.control_worrying_stop_base 1659 0.24 FALSE 4 Nea: 149, Sev: 148, Mor: 136, Not: 94
gad.worrying_too_much_about_different_things_base 1659 0.24 FALSE 4 Nea: 165, Sev: 156, Mor: 128, Not: 78
gad.trouble_relaxing_base 1660 0.24 FALSE 4 Nea: 183, Sev: 148, Mor: 121, Not: 74
gad.sit_restless_hard_base 1659 0.24 FALSE 4 Not: 207, Sev: 140, Nea: 93, Mor: 87
gad.becoming_easily_annoyed_or_irritable_base 1659 0.24 FALSE 4 Sev: 189, Mor: 129, Nea: 117, Not: 92
gad.awful_feeling_afraid_happen_base 1659 0.24 FALSE 4 Not: 159, Sev: 153, Nea: 115, Mor: 100
pcl.stressful_experience_repeated_images_base 1661 0.24 FALSE 5 Not: 147, A l: 139, Qui: 118, Mod: 64
pcl.stressful_experience_upset_reminded_base 1660 0.24 FALSE 5 Qui: 122, A l: 119, Not: 117, Mod: 98
pcl.stressful_situation_avoiding_activities_base 1660 0.24 FALSE 5 Not: 228, A l: 88, Mod: 88, Qui: 74
pcl.cut_people_feeling_distant_base 1659 0.24 FALSE 5 Ext: 151, Qui: 139, A l: 91, Mod: 82
pcl.feeling_irritable_or_having_angry_outbursts_base 1659 0.24 FALSE 5 A l: 144, Mod: 130, Not: 114, Qui: 90
pcl.difficulty_concentrating_base 1659 0.24 FALSE 5 Qui: 145, A l: 115, Mod: 106, Ext: 99
pcl.stressful_experience_repeated_images_retro 1808 0.17 FALSE 2 No: 321, Yes: 57
pcl.stressful_experience_upset_reminded_retro 1772 0.19 FALSE 2 No: 334, Yes: 80
pcl.stressful_situation_avoiding_activities_retro 1876 0.14 FALSE 2 No: 248, Yes: 62
pcl.cut_people_feeling_distant_retro 1719 0.21 FALSE 2 Yes: 322, No: 145
pcl.feeling_irritable_or_having_angry_outbursts_retro 1769 0.19 FALSE 2 No: 228, Yes: 189
pcl.difficulty_concentrating_retro 1721 0.21 FALSE 2 No: 264, Yes: 201
phq.problems_made_difficult_care 1665 0.24 FALSE 4 Som: 295, Ver: 99, Not: 82, Ext: 45
phq.pandemic_felt_feelings 1659 0.24 FALSE 5 A l: 285, Muc: 92, No : 91, A l: 48
phq.little_interest_or_pleasure_in_doing_things_retro 1751 0.20 FALSE 4 Sev: 200, Not: 118, Mor: 81, Nea: 36
phq.feeling_down_depressed_or_hopeless_retro 1751 0.20 FALSE 4 Sev: 216, Mor: 91, Not: 70, Nea: 58
phq.staying_asleep_sleeping_trouble_retro 1751 0.20 FALSE 4 Sev: 162, Not: 129, Mor: 81, Nea: 63
phq.feeling_tired_or_having_little_energy_retro 1751 0.20 FALSE 4 Sev: 194, Mor: 94, Nea: 75, Not: 72
phq.poor_appetite_or_overeating_retro 1753 0.20 FALSE 4 Sev: 138, Not: 122, Mor: 90, Nea: 83
phq.feeling_bad_failure_family_retro 1751 0.20 FALSE 4 Sev: 169, Mor: 100, Nea: 85, Not: 81
phq.trouble_concentrating_reading_newspaper_retro 1751 0.20 FALSE 4 Sev: 176, Not: 123, Mor: 92, Nea: 44
phq.moving_fidgety_noticed_opposite_retro 1751 0.20 FALSE 4 Not: 299, Sev: 97, Mor: 22, Nea: 17
phq.dead_hurting_thoughts_retro 1751 0.20 FALSE 4 Not: 228, Sev: 121, Mor: 52, Nea: 34
phq.little_interest_or_pleasure_in_doing_things_base 1660 0.24 FALSE 4 Sev: 221, Nea: 112, Mor: 108, Not: 85
phq.feeling_down_depressed_or_hopeless_base 1660 0.24 FALSE 4 Sev: 214, Nea: 125, Mor: 116, Not: 71
phq.staying_asleep_sleeping_trouble_base 1660 0.24 FALSE 4 Nea: 178, Sev: 140, Mor: 132, Not: 76
phq.feeling_tired_or_having_little_energy_base 1660 0.24 FALSE 4 Nea: 176, Sev: 166, Mor: 142, Not: 42
phq.poor_appetite_or_overeating_base 1661 0.24 FALSE 4 Nea: 159, Sev: 133, Not: 118, Mor: 115
phq.feeling_bad_failure_family_base 1660 0.24 FALSE 4 Nea: 167, Sev: 152, Mor: 122, Not: 85
phq.trouble_concentrating_reading_newspaper_base 1660 0.24 FALSE 4 Sev: 173, Nea: 141, Mor: 119, Not: 93
phq.moving_fidgety_noticed_opposite_base 1660 0.24 FALSE 4 Not: 317, Sev: 118, Mor: 57, Nea: 34
phq.dead_hurting_thoughts_base 1660 0.24 FALSE 4 Not: 261, Sev: 142, Nea: 66, Mor: 57
alsfrs.limb_weakness_noticed_past 1661 0.24 FALSE 2 No: 422, Yes: 103
alsfrs.normal 2084 0.05 FALSE 2 Nor: 74, Not: 28
alsfrs.slow_or_sloppy_all_words_are_legible 2084 0.05 FALSE 2 Not: 81, Slo: 21
alsfrs.not_all_words_are_legible 2084 0.05 FALSE 2 Not: 97, Not: 5
alsfrs.able_to_grip_pen 2084 0.05 FALSE 2 Not: 100, Abl: 2
alsfrs.unable_to_grip_pen 2084 0.05 FALSE 2 Not: 98, Una: 4
alsfrs.have_you_noticed_any_difficulty_walking 2084 0.05 FALSE 4 Nor: 64, Ear: 29, Nee: 8, No : 1
alsfrs.do_you_have_any_difficulty_climbing_stairs 2083 0.05 FALSE 5 Nor: 54, Mil: 24, Slo: 18, Nee: 5
ess.felt_excessively_sleepy_past 1662 0.24 FALSE 2 Yes: 300, No: 224
ess.sitting_and_reading 1886 0.14 FALSE 4 Sli: 130, Mod: 70, Wou: 69, Hig: 31
ess.watching_tv 1886 0.14 FALSE 4 Sli: 123, Mod: 78, Wou: 60, Hig: 39
ess.sitting_inactive_in_a_public_place 1887 0.14 FALSE 4 Wou: 189, Sli: 74, Mod: 22, Hig: 14
ess.break_passenger_car_hour 1886 0.14 FALSE 4 Sli: 98, Mod: 70, Wou: 69, Hig: 63
ess.afternoon_rest_circumstances_lying 1886 0.14 FALSE 4 Hig: 130, Mod: 79, Sli: 68, Wou: 23
ess.sitting_and_talking_to_someone 1886 0.14 FALSE 4 Wou: 262, Sli: 31, Hig: 4, Mod: 3
ess.sitting_quietly_after_a_lunch_without_alcohol 1887 0.14 FALSE 4 Wou: 146, Sli: 91, Mod: 40, Hig: 22
ess.car_minutes_stopped_traffic 1886 0.14 FALSE 4 Wou: 248, Sli: 30, Hig: 14, Mod: 8
ess.insomnia 1666 0.24 FALSE 2 Not: 454, Ins: 66
ess.narcolepsy 1666 0.24 FALSE 1 Not: 520, Nar: 0
ess.rem_sleep_behaviour_disorder 1666 0.24 FALSE 2 Not: 519, REM: 1
ess.restless_legs_syndrome 1666 0.24 FALSE 2 Not: 497, Res: 23
ess.sleep_apnea 1666 0.24 FALSE 2 Not: 517, Sle: 3
ess.sleep_terrors 1666 0.24 FALSE 2 Not: 501, Sle: 19
ess.sleepwalking 1666 0.24 FALSE 2 Not: 514, Sle: 6
ess.other 1666 0.24 FALSE 2 Not: 512, Oth: 8
ess.none 1666 0.24 FALSE 2 Non: 426, Not: 94
midas.headaches_suffered_past_month 1661 0.24 FALSE 2 No: 269, Yes: 256
midas.days_past_month_miss_work_school 2186 0.00 FALSE 0 Did: 0
midas.days_past_month_work_school_half_productivity 2186 0.00 FALSE 0 Was: 0
midas.days_past_month_miss_housework 2186 0.00 FALSE 0 Did: 0
midas.days_past_month_housework_half_productivity 2186 0.00 FALSE 0 Was: 0
midas.days_past_month_miss_social_activities 2186 0.00 FALSE 0 Did: 0
nmss.ability_taste_food_smell 1661 0.24 FALSE 2 No: 488, Yes: 37
nmss.severe_taste_smell_loss 2149 0.02 FALSE 6 Mil: 14, Min: 10, No : 5, Sev: 4
nmsw.drink_problems_choking_difficulty 1661 0.24 FALSE 2 No: 482, Yes: 43
nmsw.regularly_night_pass_urine 1661 0.24 FALSE 2 No: 345, Yes: 180
nmsw.sex_difficult_finding 1665 0.24 FALSE 2 No: 480, Yes: 41
nmsw.weak_standing_feeling_light 1661 0.24 FALSE 2 Yes: 298, No: 227
nmsw.acting_moving_sleep_talking 1662 0.24 FALSE 2 No: 441, Yes: 83
nmsw.double_vision 1661 0.24 FALSE 2 No: 478, Yes: 47
tinnitus.ears_noises_minutes_head 1661 0.24 FALSE 2 No: 425, Yes: 100
tinnitus.ears_noises_minutes_head_frequency 2086 0.05 FALSE 5 Som: 53, Now: 19, Now: 18, Not: 9
tinnitus.noises_worry_worst_upset 2086 0.05 FALSE 4 Sli: 52, Mod: 29, Not: 13, Sev: 6

Variable type: logical

skim_variable n_missing complete_rate mean count
ID.dup 0 1 0 FAL: 2186

Variable type: numeric

skim_variable n_missing complete_rate mean sd p0 p25 p50 p75 p100 hist
ID 0 1.00 2862.18 1655.83 206 1421.50 2653.0 4199.25 6159 ▇▇▇▅▅
Age_uncleaned 0 1.00 27.11 10.74 16 20.00 24.0 31.00 73 ▇▂▁▁▁
EduYrs 110 0.95 16.17 3.22 0 14.00 16.0 18.00 40 ▁▇▆▁▁
Gender_numeric 0 1.00 1.00 0.24 0 1.00 1.0 1.00 3 ▁▇▁▁▁
Sex_numeric 0 1.00 0.98 0.14 0 1.00 1.0 1.00 1 ▁▁▁▁▇
demographics.college_or_university_degree_numeric 16 0.99 0.48 0.50 0 0.00 0.0 1.00 1 ▇▁▁▁▇
demographics.a_levelsas_levels_or_equivalent_numeric 16 0.99 0.73 0.44 0 0.00 1.0 1.00 1 ▃▁▁▁▇
demographics.o_levelsgcses_or_equivalent_numeric 16 0.99 0.79 0.41 0 1.00 1.0 1.00 1 ▂▁▁▁▇
demographics.cses_or_equivalent_numeric 16 0.99 0.03 0.18 0 0.00 0.0 0.00 1 ▇▁▁▁▁
demographics.nvq_or_hnd_or_hnc_or_equivalent_numeric 16 0.99 0.12 0.32 0 0.00 0.0 0.00 1 ▇▁▁▁▁
Ethnicity_numeric 18 0.99 1.13 0.62 1 1.00 1.0 1.00 6 ▇▁▁▁▁
Age 0 1.00 27.11 10.74 16 20.00 24.0 31.00 73 ▇▂▁▁▁
age_category_numeric 0 1.00 2.54 1.24 1 2.00 2.0 3.00 8 ▇▃▂▁▁
highest_education_prepan_numeric 67 0.97 3.19 1.02 1 3.00 3.0 4.00 4 ▂▁▁▆▇
employment.phd_numeric 1659 0.24 0.02 0.16 0 0.00 0.0 0.00 1 ▇▁▁▁▁
employment.masters_degree_or_equivalent_numeric 1659 0.24 0.13 0.34 0 0.00 0.0 0.00 1 ▇▁▁▁▁
employment.postgraduate_degree_or_equivalent_numeric 1659 0.24 0.11 0.31 0 0.00 0.0 0.00 1 ▇▁▁▁▁
employment.bachelors_degree_or_equivalent_numeric 1659 0.24 0.45 0.50 0 0.00 0.0 1.00 1 ▇▁▁▁▆
employment.a_levelsas_levels_or_equivalent_numeric 1659 0.24 0.70 0.46 0 0.00 1.0 1.00 1 ▃▁▁▁▇
employment.o_levelsgcses_or_equivalent_numeric 1659 0.24 0.78 0.41 0 1.00 1.0 1.00 1 ▂▁▁▁▇
employment.cses_or_equivalent_numeric 1659 0.24 0.03 0.18 0 0.00 0.0 0.00 1 ▇▁▁▁▁
employment.nvq_or_hnd_or_hnc_or_equivalent_numeric 1659 0.24 0.14 0.34 0 0.00 0.0 0.00 1 ▇▁▁▁▁
employment.government_work_key_workers_numeric 1869 0.15 2.08 3.21 0 0.00 1.0 2.00 11 ▇▁▁▁▁
employment.unemployed_numeric 1659 0.24 0.11 0.32 0 0.00 0.0 0.00 1 ▇▁▁▁▁
employment.zerohours_contract_numeric 1659 0.24 0.03 0.17 0 0.00 0.0 0.00 1 ▇▁▁▁▁
employment.stayathome_parent_or_carer_numeric 1659 0.24 0.02 0.16 0 0.00 0.0 0.00 1 ▇▁▁▁▁
employment.retired_numeric 1659 0.24 0.03 0.18 0 0.00 0.0 0.00 1 ▇▁▁▁▁
employment.student_gcse_or_a_level_numeric 1659 0.24 0.15 0.36 0 0.00 0.0 0.00 1 ▇▁▁▁▂
employment.student_university_numeric 1659 0.24 0.20 0.40 0 0.00 0.0 0.00 1 ▇▁▁▁▂
employment.became_unemployed_numeric 1793 0.18 0.06 0.24 0 0.00 0.0 0.00 1 ▇▁▁▁▁
employment.furloughed_or_paid_leave_government_funded_numeric 1793 0.18 0.13 0.34 0 0.00 0.0 0.00 1 ▇▁▁▁▁
employment.furloughed_or_paid_leave_company_funded_numeric 1793 0.18 0.03 0.16 0 0.00 0.0 0.00 1 ▇▁▁▁▁
employment.paid_leave_furloughed_numeric 1793 0.18 0.04 0.20 0 0.00 0.0 0.00 1 ▇▁▁▁▁
highest_education_numeric 1669 0.24 3.20 1.03 1 3.00 4.0 4.00 4 ▂▁▁▅▇
key_worker_numeric 1659 0.24 0.35 0.48 0 0.00 0.0 1.00 1 ▇▁▁▁▅
ocir.felt_pandemic_feelings_numeric 2045 0.06 2.38 0.67 1 2.00 2.0 3.00 4 ▂▇▁▇▁
ocir.i_repeatedly_check_doors_windows_drawers_etc_retro_numeric 2045 0.06 0.68 1.06 0 0.00 0.0 1.00 4 ▇▂▁▁▁
ocir.arranged_things_change_upset_retro_numeric 2045 0.06 1.84 1.45 0 1.00 2.0 3.00 4 ▇▇▅▅▆
ocir.repeat_feel_numbers_retro_numeric 2045 0.06 0.75 1.20 0 0.00 0.0 1.00 4 ▇▂▂▁▁
ocir.clean_simply_wash_feel_retro_numeric 2045 0.06 1.16 1.32 0 0.00 1.0 2.00 4 ▇▃▂▂▂
ocir.mind_upset_unpleasant_thoughts_retro_numeric 2045 0.06 2.21 1.40 0 1.00 2.0 3.00 4 ▅▆▆▆▇
ocir.afraid_avoid_throwing_things_retro_numeric 2045 0.06 1.00 1.13 0 0.00 1.0 2.00 4 ▇▅▂▂▁
ocir.light_switches_water_taps_retro_numeric 2045 0.06 0.50 0.99 0 0.00 0.0 1.00 4 ▇▁▁▁▁
ocir.arranged_things_retro_numeric 2045 0.06 1.51 1.35 0 0.00 1.0 3.00 4 ▇▇▅▃▃
ocir.good_feel_bad_numbers_retro_numeric 2045 0.06 1.09 1.44 0 0.00 0.0 2.00 4 ▇▂▂▂▂
ocir.hands_longer_wash_retro_numeric 2045 0.06 0.88 1.37 0 0.00 0.0 2.00 4 ▇▁▁▁▁
ocir.saved_things_retro_numeric 2045 0.06 0.74 1.10 0 0.00 0.0 1.00 4 ▇▂▂▁▁
ocir.frequently_difficulty_rid_nasty_retro_numeric 2045 0.06 2.07 1.46 0 1.00 2.0 3.00 4 ▇▅▆▇▇
ocir.i_check_things_more_often_than_necessary_retro_numeric 2045 0.06 1.50 1.26 0 0.00 1.0 2.00 4 ▇▇▆▃▂
ocir.arranged_properly_objects_upset_retro_numeric 2045 0.06 1.58 1.39 0 0.00 1.0 3.00 4 ▇▆▆▃▃
ocir.feel_compelled_count_things_retro_numeric 2045 0.06 0.99 1.28 0 0.00 0.0 2.00 4 ▇▃▂▁▁
ocir.strangers_touch_touched_difficult_retro_numeric 2045 0.06 1.40 1.46 0 0.00 1.0 2.00 4 ▇▅▃▂▃
ocir.control_difficult_find_thoughts_retro_numeric 2045 0.06 2.53 1.30 0 1.00 3.0 4.00 4 ▂▅▅▅▇
ocir.i_collect_things_i_dont_need_retro_numeric 2045 0.06 0.70 1.03 0 0.00 0.0 1.00 4 ▇▃▂▁▁
ocir.i_repeatedly_check_doors_windows_drawers_etc_base_numeric 2104 0.04 0.49 0.91 0 0.00 0.0 1.00 4 ▇▂▁▁▁
ocir.arranged_things_change_upset_base_numeric 2104 0.04 1.34 1.28 0 0.00 1.0 2.00 4 ▇▇▅▂▂
ocir.repeat_feel_numbers_base_numeric 2104 0.04 0.52 0.97 0 0.00 0.0 1.00 4 ▇▂▁▁▁
ocir.clean_simply_wash_feel_base_numeric 2104 0.04 0.71 1.06 0 0.00 0.0 1.00 4 ▇▂▂▁▁
ocir.mind_upset_unpleasant_thoughts_base_numeric 2104 0.04 1.85 1.30 0 1.00 2.0 3.00 4 ▅▇▆▅▃
ocir.afraid_avoid_throwing_things_base_numeric 2104 0.04 0.74 0.93 0 0.00 0.0 1.00 4 ▇▅▂▁▁
ocir.light_switches_water_taps_base_numeric 2104 0.04 0.45 0.93 0 0.00 0.0 1.00 4 ▇▂▁▁▁
ocir.arranged_things_base_numeric 2104 0.04 1.22 1.22 0 0.00 1.0 2.00 4 ▇▇▃▂▂
ocir.good_feel_bad_numbers_base_numeric 2104 0.04 0.78 1.24 0 0.00 0.0 1.00 4 ▇▂▁▁▁
ocir.hands_longer_wash_base_numeric 2104 0.04 0.67 1.03 0 0.00 0.0 1.00 4 ▇▃▁▁▁
ocir.saved_things_base_numeric 2104 0.04 0.48 0.85 0 0.00 0.0 1.00 3 ▇▂▁▁▁
ocir.frequently_difficulty_rid_nasty_base_numeric 2104 0.04 1.77 1.33 0 1.00 2.0 3.00 4 ▆▆▇▅▃
ocir.i_check_things_more_often_than_necessary_base_numeric 2104 0.04 0.90 1.03 0 0.00 1.0 1.00 4 ▇▆▃▁▁
ocir.arranged_properly_objects_upset_base_numeric 2104 0.04 1.18 1.21 0 0.00 1.0 2.00 4 ▇▇▃▂▂
ocir.feel_compelled_count_things_base_numeric 2104 0.04 0.84 1.23 0 0.00 0.0 1.00 4 ▇▂▁▁▁
ocir.strangers_touch_touched_difficult_base_numeric 2104 0.04 0.95 1.27 0 0.00 0.0 2.00 4 ▇▂▂▂▁
ocir.control_difficult_find_thoughts_base_numeric 2104 0.04 2.11 1.23 0 1.00 2.0 3.00 4 ▃▆▇▆▅
ocir.i_collect_things_i_dont_need_base_numeric 2104 0.04 0.70 0.94 0 0.00 0.0 1.00 4 ▇▃▂▁▁
ocir.sum_score_retro_raw 1832 0.16 9.21 14.49 0 0.00 0.0 16.00 67 ▇▂▁▁▁
ocir.sum_score_base_raw 1832 0.16 4.10 9.66 0 0.00 0.0 0.00 59 ▇▁▁▁▁
na_per_person_ocir_retro 1832 0.16 10.83 8.82 0 0.00 18.0 18.00 18 ▅▁▁▁▇
na_per_person_ocir_base 1832 0.16 13.83 7.60 0 18.00 18.0 18.00 18 ▂▁▁▁▇
ocir.sum_score_base 2104 0.04 17.71 12.76 0 8.25 15.0 23.00 59 ▇▇▃▁▁
ocir.sum_score_retro 2045 0.06 23.13 14.32 2 12.00 21.0 31.00 67 ▇▇▅▂▁
anxiety_disorders_numeric 38 0.98 0.61 0.49 0 0.00 1.0 1.00 1 ▅▁▁▁▇
mhd.specific_phobia_e.g._phobia_of_flying_numeric 38 0.98 0.03 0.18 0 0.00 0.0 0.00 1 ▇▁▁▁▁
mhd.social_anxiety_or_social_phobia_numeric 38 0.98 0.17 0.37 0 0.00 0.0 0.00 1 ▇▁▁▁▂
agoraphobia_panic_disorder_numeric 38 0.98 0.27 0.44 0 0.00 0.0 1.00 1 ▇▁▁▁▃
depressive_disorders_numeric 38 0.98 0.66 0.47 0 0.00 1.0 1.00 1 ▅▁▁▁▇
eating_disorders_numeric 79 0.96 0.81 0.39 0 1.00 1.0 1.00 1 ▂▁▁▁▇
obsessive_compulsive_disorders_numeric 38 0.98 0.28 0.45 0 0.00 0.0 1.00 1 ▇▁▁▁▃
psychotic_disorders_numeric 60 0.97 0.02 0.15 0 0.00 0.0 0.00 1 ▇▁▁▁▁
mhd.mania_hypomania_bipolar_or_manicdepression_numeric 38 0.98 0.04 0.19 0 0.00 0.0 0.00 1 ▇▁▁▁▁
mhd.posttraumatic_stress_disorder_ptsd_numeric 38 0.98 0.12 0.33 0 0.00 0.0 0.00 1 ▇▁▁▁▁
autism_spectrum_disorder_numeric 60 0.97 0.05 0.21 0 0.00 0.0 0.00 1 ▇▁▁▁▁
mhd.attention_deficit_hyperactivity_disorder_numeric 60 0.97 0.03 0.17 0 0.00 0.0 0.00 1 ▇▁▁▁▁
mhd.personality_disorder_numeric 60 0.97 0.11 0.32 0 0.00 0.0 0.00 1 ▇▁▁▁▁
depression_and_anxiety_numeric 38 0.98 1.12 0.89 0 1.00 1.0 2.00 3 ▃▇▁▂▂
restricting_vs_binge_eating_eating_disorders_numeric 79 0.96 0.96 0.58 0 1.00 1.0 1.00 2 ▂▁▇▁▂
bipolar_and_schizophrenia_numeric 65 0.97 0.13 0.58 0 0.00 0.0 0.00 3 ▇▁▁▁▁
control_numeric 39 0.98 0.04 0.18 0 0.00 0.0 0.00 1 ▇▁▁▁▁
disorders_total_count 108 0.95 2.72 1.58 0 2.00 3.0 4.00 9 ▅▇▅▁▁
comorbidity_total_count_numeric 252 0.88 1.93 1.45 0 1.00 2.0 3.00 8 ▇▇▂▁▁
comorbidity_total_count_factor_numeric 252 0.88 1.72 1.11 0 1.00 2.0 3.00 3 ▅▅▁▇▇
personality_cluster_a_numeric 2186 0.00 NaN NA NA NA NA NA NA
personality_cluster_b_numeric 2186 0.00 NaN NA NA NA NA NA NA
personality_cluster_c_numeric 2186 0.00 NaN NA NA NA NA NA NA
gad.feeling_nervous_anxious_or_on_edge_prepan_numeric 2080 0.05 1.69 1.08 0 1.00 2.0 3.00 3 ▃▇▁▅▇
gad.control_worrying_stop_prepan_numeric 2080 0.05 1.54 1.16 0 1.00 1.0 3.00 3 ▆▇▁▅▇
gad.worrying_too_much_about_different_things_prepan_numeric 2080 0.05 1.66 1.10 0 1.00 2.0 3.00 3 ▅▇▁▆▇
gad.trouble_relaxing_prepan_numeric 2080 0.05 1.75 1.09 0 1.00 2.0 3.00 3 ▃▇▁▅▇
gad.sit_restless_hard_prepan_numeric 2080 0.05 0.97 1.06 0 0.00 1.0 2.00 3 ▇▆▁▂▂
gad.becoming_easily_annoyed_or_irritable_prepan_numeric 2080 0.05 1.20 0.92 0 1.00 1.0 2.00 3 ▃▇▁▃▂
gad.awful_feeling_afraid_happen_prepan_numeric 2080 0.05 1.13 1.09 0 0.00 1.0 2.00 3 ▇▆▁▅▃
gad.sum_score_prepan_raw 2078 0.05 9.76 6.12 0 4.00 10.0 15.00 21 ▇▆▅▇▅
na_per_person_gad_prepan 2078 0.05 0.13 0.95 0 0.00 0.0 0.00 7 ▇▁▁▁▁
gad.sum_score_prepan 2080 0.05 9.94 6.03 0 5.00 10.0 15.00 21 ▇▆▆▇▆
pcl.stressful_experience_repeated_images_prepan_numeric 197 0.91 2.80 1.40 1 2.00 3.0 4.00 5 ▇▇▅▇▅
pcl.stressful_experience_upset_reminded_prepan_numeric 199 0.91 3.20 1.35 1 2.00 3.0 4.00 5 ▅▆▆▇▆
pcl.stressful_situation_avoiding_activities_prepan_numeric 202 0.91 2.75 1.42 1 1.00 3.0 4.00 5 ▇▇▅▆▅
pcl.cut_people_feeling_distant_prepan_numeric 197 0.91 3.58 1.32 1 3.00 4.0 5.00 5 ▂▃▅▆▇
pcl.feeling_irritable_or_having_angry_outbursts_prepan_numeric 197 0.91 3.15 1.33 1 2.00 3.0 4.00 5 ▅▆▆▇▆
pcl.difficulty_concentrating_prepan_numeric 202 0.91 3.55 1.26 1 3.00 4.0 5.00 5 ▂▅▅▇▇
pcl.sum_score_prepan_raw 0 1.00 17.30 8.02 0 13.00 18.0 24.00 30 ▃▃▇▇▆
na_per_person_pcl_prepan 0 1.00 0.55 1.71 0 0.00 0.0 0.00 6 ▇▁▁▁▁
pcl.sum_score_prepan 216 0.90 19.02 6.23 6 14.00 19.0 24.00 30 ▃▆▇▇▅
phq.little_interest_or_pleasure_in_doing_things_prepan_numeric 2080 0.05 1.37 1.11 0 0.00 1.0 2.00 3 ▇▇▁▆▆
phq.feeling_down_depressed_or_hopeless_prepan_numeric 2080 0.05 1.44 1.05 0 1.00 1.0 2.00 3 ▃▇▁▃▅
phq.staying_asleep_sleeping_trouble_prepan_numeric 2080 0.05 1.49 1.17 0 0.00 1.5 3.00 3 ▇▆▁▆▇
phq.feeling_tired_or_having_little_energy_prepan_numeric 2080 0.05 1.80 1.15 0 1.00 2.0 3.00 3 ▃▅▁▃▇
phq.poor_appetite_or_overeating_prepan_numeric 2080 0.05 1.35 1.20 0 0.00 1.0 2.00 3 ▇▅▁▅▆
phq.feeling_bad_failure_family_prepan_numeric 2080 0.05 1.71 1.16 0 1.00 2.0 3.00 3 ▅▆▁▃▇
phq.trouble_concentrating_reading_newspaper_prepan_numeric 2080 0.05 1.25 1.13 0 0.00 1.0 2.00 3 ▇▆▁▅▅
phq.moving_fidgety_noticed_opposite_prepan_numeric 2080 0.05 0.58 0.88 0 0.00 0.0 1.00 3 ▇▃▁▁▁
phq.dead_hurting_thoughts_prepan_numeric 2080 0.05 1.06 1.10 0 0.00 1.0 2.00 3 ▇▆▁▂▃
phq.sum_score_prepan_raw 2078 0.05 11.83 7.51 0 5.75 12.0 18.00 27 ▇▅▇▆▂
na_per_person_phq_prepan 2078 0.05 0.17 1.22 0 0.00 0.0 0.00 9 ▇▁▁▁▁
phq.missing_only_suicide_item_prepan 2078 0.05 0.00 0.00 0 0.00 0.0 0.00 0 ▁▁▇▁▁
phq.sum_score_prepan 2080 0.05 12.06 7.40 0 6.00 12.0 18.00 27 ▇▅▇▆▂
phq.sum_score_8items_prepan 2078 0.05 11.83 7.51 0 5.75 12.0 18.00 27 ▇▅▇▆▂
ocir.i_repeatedly_check_doors_windows_drawers_etc_prepan_numeric 2080 0.05 0.72 1.05 0 0.00 0.0 1.00 4 ▇▃▂▁▁
ocir.arranged_things_change_upset_prepan_numeric 2080 0.05 1.64 1.25 0 1.00 1.0 2.00 4 ▃▇▃▂▂
ocir.repeat_feel_numbers_prepan_numeric 2080 0.05 0.52 1.05 0 0.00 0.0 0.75 4 ▇▁▁▁▁
ocir.clean_simply_wash_feel_prepan_numeric 2080 0.05 0.78 1.06 0 0.00 0.0 1.00 4 ▇▃▂▁▁
ocir.mind_upset_unpleasant_thoughts_prepan_numeric 2080 0.05 1.73 1.37 0 1.00 2.0 3.00 4 ▇▇▆▆▅
ocir.afraid_avoid_throwing_things_prepan_numeric 2080 0.05 0.92 0.96 0 0.00 1.0 1.00 4 ▇▇▃▂▁
ocir.light_switches_water_taps_prepan_numeric 2080 0.05 0.54 1.03 0 0.00 0.0 1.00 4 ▇▂▁▁▁
ocir.arranged_things_prepan_numeric 2080 0.05 1.56 1.28 0 1.00 1.0 2.75 4 ▅▇▃▃▂
ocir.good_feel_bad_numbers_prepan_numeric 2080 0.05 0.94 1.30 0 0.00 0.0 1.00 4 ▇▃▁▂▁
ocir.hands_longer_wash_prepan_numeric 2080 0.05 0.64 1.07 0 0.00 0.0 1.00 4 ▇▂▁▁▁
ocir.saved_things_prepan_numeric 2080 0.05 1.17 1.20 0 0.00 1.0 2.00 4 ▇▅▃▃▁
ocir.frequently_difficulty_rid_nasty_prepan_numeric 2080 0.05 1.47 1.36 0 0.00 1.0 3.00 4 ▇▅▃▅▂
ocir.i_check_things_more_often_than_necessary_prepan_numeric 2080 0.05 1.58 1.22 0 1.00 1.0 2.00 4 ▆▇▆▅▂
ocir.arranged_properly_objects_upset_prepan_numeric 2080 0.05 1.64 1.25 0 1.00 1.0 2.00 4 ▃▇▃▂▂
ocir.feel_compelled_count_things_prepan_numeric 2080 0.05 0.92 1.25 0 0.00 0.0 1.00 4 ▇▃▁▂▁
ocir.strangers_touch_touched_difficult_prepan_numeric 2080 0.05 0.76 1.05 0 0.00 0.0 1.00 4 ▇▃▂▁▁
ocir.control_difficult_find_thoughts_prepan_numeric 2080 0.05 2.12 1.32 0 1.00 2.0 3.00 4 ▃▆▅▇▅
ocir.i_collect_things_i_dont_need_prepan_numeric 2080 0.05 0.68 0.88 0 0.00 0.0 1.00 4 ▇▆▁▁▁
ocir.sum_score_prepan_raw 2078 0.05 19.95 13.76 0 9.75 18.0 28.00 65 ▇▇▅▁▁
na_per_person_ocir_prepan 2078 0.05 0.33 2.44 0 0.00 0.0 0.00 18 ▇▁▁▁▁
ocir.sum_score_prepan 2080 0.05 20.33 13.61 0 10.00 18.0 28.00 65 ▇▇▅▁▁
gad.problems_made_difficult_care_numeric 1679 0.23 2.19 0.80 1 2.00 2.0 3.00 4 ▂▇▁▂▁
gad.pandemic_felt_feelings_numeric 1659 0.24 2.31 0.96 1 2.00 2.0 3.00 5 ▃▇▃▂▁
gad.feeling_nervous_anxious_or_on_edge_retro_numeric 1770 0.19 1.48 0.89 0 1.00 1.0 2.00 3 ▂▇▁▃▃
gad.control_worrying_stop_retro_numeric 1770 0.19 1.30 0.95 0 1.00 1.0 2.00 3 ▃▇▁▅▂
gad.worrying_too_much_about_different_things_retro_numeric 1770 0.19 1.40 0.97 0 1.00 1.0 2.00 3 ▃▇▁▃▃
gad.trouble_relaxing_retro_numeric 1770 0.19 1.30 1.01 0 1.00 1.0 2.00 3 ▅▇▁▃▃
gad.sit_restless_hard_retro_numeric 1770 0.19 0.82 0.99 0 0.00 1.0 1.00 3 ▇▅▁▂▂
gad.becoming_easily_annoyed_or_irritable_retro_numeric 1770 0.19 1.10 0.89 0 0.75 1.0 1.00 3 ▃▇▁▂▂
gad.awful_feeling_afraid_happen_retro_numeric 1770 0.19 0.93 0.97 0 0.00 1.0 1.00 3 ▇▇▁▂▂
gad.feeling_nervous_anxious_or_on_edge_base_numeric 1659 0.24 1.78 0.99 0 1.00 2.0 3.00 3 ▂▇▁▅▇
gad.control_worrying_stop_base_numeric 1659 0.24 1.65 1.07 0 1.00 2.0 3.00 3 ▅▇▁▇▇
gad.worrying_too_much_about_different_things_base_numeric 1659 0.24 1.72 1.06 0 1.00 2.0 3.00 3 ▃▇▁▆▇
gad.trouble_relaxing_base_numeric 1660 0.24 1.79 1.07 0 1.00 2.0 3.00 3 ▃▆▁▅▇
gad.sit_restless_hard_base_numeric 1659 0.24 1.13 1.12 0 0.00 1.0 2.00 3 ▇▆▁▃▃
gad.becoming_easily_annoyed_or_irritable_base_numeric 1659 0.24 1.51 1.02 0 1.00 1.0 2.00 3 ▃▇▁▆▅
gad.awful_feeling_afraid_happen_base_numeric 1659 0.24 1.32 1.12 0 0.00 1.0 2.00 3 ▇▇▁▅▆
gad.sum_score_retro_raw 1659 0.24 6.56 5.75 0 1.00 6.0 11.00 21 ▇▅▃▂▁
gad.sum_score_base_raw 1659 0.24 10.89 6.02 0 6.00 11.0 16.00 21 ▆▇▇▇▇
na_per_person_gad_base 1659 0.24 0.00 0.04 0 0.00 0.0 0.00 1 ▇▁▁▁▁
na_per_person_gad_retro 1659 0.24 1.47 2.86 0 0.00 0.0 0.00 7 ▇▁▁▁▂
gad.sum_score_base 1660 0.24 10.90 6.02 0 6.00 11.0 16.00 21 ▆▇▇▇▇
gad.sum_score_retro 1770 0.19 8.31 5.23 0 4.00 7.0 12.00 21 ▇▇▅▃▂
pcl.stressful_experience_repeated_images_base_numeric 1661 0.24 2.62 1.38 1 1.00 2.0 4.00 5 ▇▇▃▆▃
pcl.stressful_experience_upset_reminded_base_numeric 1660 0.24 2.83 1.36 1 2.00 3.0 4.00 5 ▇▇▆▇▅
pcl.stressful_situation_avoiding_activities_base_numeric 1660 0.24 2.29 1.38 1 1.00 2.0 3.00 5 ▇▃▃▂▂
pcl.cut_people_feeling_distant_base_numeric 1659 0.24 3.42 1.38 1 2.00 4.0 5.00 5 ▃▅▅▇▇
pcl.feeling_irritable_or_having_angry_outbursts_base_numeric 1659 0.24 2.65 1.25 1 2.00 3.0 4.00 5 ▆▇▇▅▃
pcl.difficulty_concentrating_base_numeric 1659 0.24 3.20 1.30 1 2.00 3.0 4.00 5 ▃▆▆▇▆
pcl.stressful_experience_repeated_images_retro_numeric 1808 0.17 0.15 0.36 0 0.00 0.0 0.00 1 ▇▁▁▁▂
pcl.stressful_experience_upset_reminded_retro_numeric 1772 0.19 0.19 0.40 0 0.00 0.0 0.00 1 ▇▁▁▁▂
pcl.stressful_situation_avoiding_activities_retro_numeric 1876 0.14 0.20 0.40 0 0.00 0.0 0.00 1 ▇▁▁▁▂
pcl.cut_people_feeling_distant_retro_numeric 1719 0.21 0.69 0.46 0 0.00 1.0 1.00 1 ▃▁▁▁▇
pcl.feeling_irritable_or_having_angry_outbursts_retro_numeric 1769 0.19 0.45 0.50 0 0.00 0.0 1.00 1 ▇▁▁▁▆
pcl.difficulty_concentrating_retro_numeric 1721 0.21 0.43 0.50 0 0.00 0.0 1.00 1 ▇▁▁▁▆
pcl.sum_score_retro_raw 1659 0.24 1.73 1.60 0 0.00 2.0 3.00 6 ▇▃▂▂▁
pcl.sum_score_base_raw 1659 0.24 16.98 6.08 6 12.00 17.0 21.00 30 ▅▆▇▅▂
na_per_person_pcl_base 1659 0.24 0.01 0.14 0 0.00 0.0 0.00 3 ▇▁▁▁▁
na_per_person_pcl_retro 1659 0.24 1.35 1.67 0 0.00 1.0 2.00 6 ▇▁▁▁▁
pcl.sum_score_base 1661 0.24 16.99 6.09 6 12.00 17.0 21.00 30 ▅▆▇▅▂
pcl.sum_score_retro 1948 0.11 2.12 1.79 0 0.00 2.0 3.00 6 ▇▅▃▂▂
phq.problems_made_difficult_care_numeric 1665 0.24 2.21 0.81 1 2.00 2.0 3.00 4 ▂▇▁▃▁
phq.pandemic_felt_feelings_numeric 1659 0.24 2.24 0.92 1 2.00 2.0 3.00 5 ▂▇▂▂▁
phq.little_interest_or_pleasure_in_doing_things_retro_numeric 1751 0.20 1.08 0.89 0 0.00 1.0 2.00 3 ▅▇▁▃▂
phq.feeling_down_depressed_or_hopeless_retro_numeric 1751 0.20 1.31 0.90 0 1.00 1.0 2.00 3 ▂▇▁▃▂
phq.staying_asleep_sleeping_trouble_retro_numeric 1751 0.20 1.18 1.02 0 0.00 1.0 2.00 3 ▆▇▁▃▃
phq.feeling_tired_or_having_little_energy_retro_numeric 1751 0.20 1.40 0.96 0 1.00 1.0 2.00 3 ▃▇▁▃▃
phq.poor_appetite_or_overeating_retro_numeric 1753 0.20 1.31 1.08 0 0.00 1.0 2.00 3 ▇▇▁▅▅
phq.feeling_bad_failure_family_retro_numeric 1751 0.20 1.43 1.01 0 1.00 1.0 2.00 3 ▃▇▁▅▅
phq.trouble_concentrating_reading_newspaper_retro_numeric 1751 0.20 1.13 0.94 0 0.00 1.0 2.00 3 ▆▇▁▅▂
phq.moving_fidgety_noticed_opposite_retro_numeric 1751 0.20 0.44 0.76 0 0.00 0.0 1.00 3 ▇▂▁▁▁
phq.dead_hurting_thoughts_retro_numeric 1751 0.20 0.75 0.95 0 0.00 0.0 1.00 3 ▇▅▁▂▁
phq.little_interest_or_pleasure_in_doing_things_base_numeric 1660 0.24 1.47 1.00 0 1.00 1.0 2.00 3 ▃▇▁▃▅
phq.feeling_down_depressed_or_hopeless_base_numeric 1660 0.24 1.56 1.00 0 1.00 1.0 2.00 3 ▂▇▁▅▅
phq.staying_asleep_sleeping_trouble_base_numeric 1660 0.24 1.78 1.07 0 1.00 2.0 3.00 3 ▃▆▁▆▇
phq.feeling_tired_or_having_little_energy_base_numeric 1660 0.24 1.86 0.98 0 1.00 2.0 3.00 3 ▂▇▁▆▇
phq.poor_appetite_or_overeating_base_numeric 1661 0.24 1.60 1.14 0 1.00 2.0 3.00 3 ▆▇▁▆▇
phq.feeling_bad_failure_family_base_numeric 1660 0.24 1.71 1.08 0 1.00 2.0 3.00 3 ▅▇▁▆▇
phq.trouble_concentrating_reading_newspaper_base_numeric 1660 0.24 1.59 1.07 0 1.00 1.0 3.00 3 ▅▇▁▆▆
phq.moving_fidgety_noticed_opposite_base_numeric 1660 0.24 0.63 0.92 0 0.00 0.0 1.00 3 ▇▃▁▂▁
phq.dead_hurting_thoughts_base_numeric 1660 0.24 0.86 1.04 0 0.00 1.0 1.00 3 ▇▅▁▂▂
phq.sum_score_retro_raw 1659 0.24 8.28 6.79 0 2.00 7.0 13.00 27 ▇▅▅▂▁
phq.sum_score_base_raw 1659 0.24 13.03 6.75 0 8.00 12.0 19.00 27 ▃▇▇▅▃
na_per_person_phq_retro 1659 0.24 1.57 3.42 0 0.00 0.0 0.00 9 ▇▁▁▁▂
phq.missing_only_suicide_item_retro 1659 0.24 0.00 0.00 0 0.00 0.0 0.00 0 ▁▁▇▁▁
na_per_person_phq_base 1659 0.24 0.02 0.39 0 0.00 0.0 0.00 9 ▇▁▁▁▁
phq.missing_only_suicide_item_base 1659 0.24 0.00 0.00 0 0.00 0.0 0.00 0 ▁▁▇▁▁
phq.sum_score_base 1661 0.24 13.07 6.74 0 8.00 12.0 19.00 27 ▃▇▇▅▃
phq.sum_score_8items_base 1659 0.24 13.03 6.75 0 8.00 12.0 19.00 27 ▃▇▇▅▃
phq.sum_score_retro 1753 0.20 10.06 6.19 0 5.00 9.0 14.00 27 ▇▇▇▃▂
phq.sum_score_8items_retro 1659 0.24 8.28 6.79 0 2.00 7.0 13.00 27 ▇▅▅▂▁
alsfrs.limb_weakness_noticed_past_numeric 1661 0.24 0.20 0.40 0 0.00 0.0 0.00 1 ▇▁▁▁▂
alsfrs.normal_numeric 2084 0.05 0.73 0.45 0 0.00 1.0 1.00 1 ▃▁▁▁▇
alsfrs.slow_or_sloppy_all_words_are_legible_numeric 2084 0.05 0.21 0.41 0 0.00 0.0 0.00 1 ▇▁▁▁▂
alsfrs.not_all_words_are_legible_numeric 2084 0.05 0.05 0.22 0 0.00 0.0 0.00 1 ▇▁▁▁▁
alsfrs.able_to_grip_pen_numeric 2084 0.05 0.02 0.14 0 0.00 0.0 0.00 1 ▇▁▁▁▁
alsfrs.unable_to_grip_pen_numeric 2084 0.05 0.04 0.20 0 0.00 0.0 0.00 1 ▇▁▁▁▁
alsfrs.have_you_noticed_any_difficulty_walking_numeric 2084 0.05 0.48 0.73 0 0.00 0.0 1.00 4 ▇▃▁▁▁
alsfrs.do_you_have_any_difficulty_climbing_stairs_numeric 2083 0.05 0.86 1.06 0 0.00 0.0 2.00 4 ▇▂▃▁▁
ess.felt_excessively_sleepy_past_numeric 1662 0.24 0.57 0.50 0 0.00 1.0 1.00 1 ▆▁▁▁▇
ess.sitting_and_reading_numeric 1886 0.14 1.21 0.91 0 1.00 1.0 2.00 3 ▅▇▁▅▂
ess.watching_tv_numeric 1886 0.14 1.32 0.94 0 1.00 1.0 2.00 3 ▃▇▁▅▂
ess.sitting_inactive_in_a_public_place_numeric 1887 0.14 0.54 0.82 0 0.00 0.0 1.00 3 ▇▃▁▁▁
ess.break_passenger_car_hour_numeric 1886 0.14 1.42 1.06 0 1.00 1.0 2.00 3 ▆▇▁▆▅
ess.afternoon_rest_circumstances_lying_numeric 1886 0.14 2.05 0.98 0 1.00 2.0 3.00 3 ▂▅▁▅▇
ess.sitting_and_talking_to_someone_numeric 1886 0.14 0.16 0.49 0 0.00 0.0 0.00 3 ▇▁▁▁▁
ess.sitting_quietly_after_a_lunch_without_alcohol_numeric 1887 0.14 0.79 0.94 0 0.00 1.0 1.00 3 ▇▅▁▂▁
ess.car_minutes_stopped_traffic_numeric 1886 0.14 0.29 0.74 0 0.00 0.0 0.00 3 ▇▁▁▁▁
ess.insomnia_numeric 1666 0.24 0.13 0.33 0 0.00 0.0 0.00 1 ▇▁▁▁▁
ess.narcolepsy_numeric 1666 0.24 0.00 0.00 0 0.00 0.0 0.00 0 ▁▁▇▁▁
ess.rem_sleep_behaviour_disorder_numeric 1666 0.24 0.00 0.04 0 0.00 0.0 0.00 1 ▇▁▁▁▁
ess.restless_legs_syndrome_numeric 1666 0.24 0.04 0.21 0 0.00 0.0 0.00 1 ▇▁▁▁▁
ess.sleep_apnea_numeric 1666 0.24 0.01 0.08 0 0.00 0.0 0.00 1 ▇▁▁▁▁
ess.sleep_terrors_numeric 1666 0.24 0.04 0.19 0 0.00 0.0 0.00 1 ▇▁▁▁▁
ess.sleepwalking_numeric 1666 0.24 0.01 0.11 0 0.00 0.0 0.00 1 ▇▁▁▁▁
ess.other_numeric 1666 0.24 0.02 0.12 0 0.00 0.0 0.00 1 ▇▁▁▁▁
ess.none_numeric 1666 0.24 0.82 0.39 0 1.00 1.0 1.00 1 ▂▁▁▁▇
midas.headaches_suffered_past_month_numeric 1661 0.24 0.49 0.50 0 0.00 0.0 1.00 1 ▇▁▁▁▇
midas.days_past_month_miss_work_school_numeric 1966 0.10 1.38 3.58 0 0.00 0.0 1.00 25 ▇▁▁▁▁
midas.days_past_month_work_school_half_productivity_numeric 1962 0.10 4.54 6.13 0 0.00 2.0 6.00 31 ▇▁▁▁▁
midas.days_past_month_miss_housework_numeric 1960 0.10 4.89 5.92 0 0.00 3.0 6.00 31 ▇▁▁▁▁
midas.days_past_month_housework_half_productivity_numeric 1955 0.11 5.47 6.31 0 0.00 3.0 9.00 31 ▇▂▁▁▁
midas.days_past_month_miss_social_activities_numeric 1972 0.10 3.51 5.45 0 0.00 1.0 5.00 31 ▇▁▁▁▁
nmss.ability_taste_food_smell_numeric 1661 0.24 0.07 0.26 0 0.00 0.0 0.00 1 ▇▁▁▁▁
nmss.severe_taste_smell_loss_numeric 2149 0.02 1.84 1.26 0 1.00 2.0 2.00 5 ▇▇▂▂▁
nmsw.drink_problems_choking_difficulty_numeric 1661 0.24 0.08 0.27 0 0.00 0.0 0.00 1 ▇▁▁▁▁
nmsw.regularly_night_pass_urine_numeric 1661 0.24 0.34 0.48 0 0.00 0.0 1.00 1 ▇▁▁▁▅
nmsw.sex_difficult_finding_numeric 1665 0.24 0.08 0.27 0 0.00 0.0 0.00 1 ▇▁▁▁▁
nmsw.weak_standing_feeling_light_numeric 1661 0.24 0.57 0.50 0 0.00 1.0 1.00 1 ▆▁▁▁▇
nmsw.acting_moving_sleep_talking_numeric 1662 0.24 0.16 0.37 0 0.00 0.0 0.00 1 ▇▁▁▁▂
nmsw.double_vision_numeric 1661 0.24 0.09 0.29 0 0.00 0.0 0.00 1 ▇▁▁▁▁
tinnitus.ears_noises_minutes_head_numeric 1661 0.24 0.19 0.39 0 0.00 0.0 0.00 1 ▇▁▁▁▂
tinnitus.ears_noises_minutes_head_frequency_numeric 2086 0.05 2.44 0.92 0 2.00 2.0 3.00 4 ▁▂▇▃▃
tinnitus.noises_worry_worst_upset_numeric 2086 0.05 1.28 0.77 0 1.00 1.0 2.00 3 ▂▇▁▅▁

Variable type: POSIXct

skim_variable n_missing complete_rate min max median n_unique
startDate.prepandemic 0 1.00 2020-02-26 14:44:41 2020-09-29 10:33:37 2020-03-06 21:45:43 2183
startDate.coping 1659 0.24 2020-05-04 17:36:38 2020-09-06 16:44:11 2020-05-07 17:53:31 518

Definition of prepandemic and baseline

Exlcude people who have joined GLAD/EDGI after the pandemic began, sensitivity analyses done on the cut off’s we have chosen. Potentially GLAD/EDGI particiapnts between January to April. EDGI launched on February 24th.

Prepandemic GLAD/EDGI = Prepandemic (GLAD/EDGI sign-up questionnaire)

Retrospective = COPING/RAMP sign up questionnaire; only of those participants who have reported a change in symptoms

Baseline = COPING/RAMP sign up questionnaire

Dates for the definition of prepandemic

Frequencies  
dat$prepandemic_january_31  
Type: Factor  

                                  Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
------------------------------- ------ --------- -------------- --------- --------------
      Sign up after 31. January   2186    100.00         100.00    100.00         100.00
                           <NA>      0                               0.00         100.00
                          Total   2186    100.00         100.00    100.00         100.00
Frequencies  
dat$prepandemic_march_1  
Type: Factor  

                                Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
----------------------------- ------ --------- -------------- --------- --------------
       Sign up after 1. March   1513     69.21          69.21     69.21          69.21
      Sign up before 1. March    673     30.79         100.00     30.79         100.00
                         <NA>      0                               0.00         100.00
                        Total   2186    100.00         100.00    100.00         100.00
Frequencies  
dat$prepandemic_march_23  
Type: Factor  

                                 Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
------------------------------ ------ --------- -------------- --------- --------------
       Sign up after 23. March    547     25.02          25.02     25.02          25.02
      Sign up before 23. March   1639     74.98         100.00     74.98         100.00
                          <NA>      0                               0.00         100.00
                         Total   2186    100.00         100.00    100.00         100.00

Calculate the time difference between starting the COPING questionnaire and the beginning of the pandemic

Descriptive Statistics  
dat$time_diff_coping_first_case_uk_jan_31  
N: 2186  

                  time_diff_coping_first_case_uk_jan_31
--------------- ---------------------------------------
           Mean                                   15.44
        Std.Dev                                    3.29
            Min                                   13.53
         Median                                   13.96
            Max                                   31.39
        N.Valid                                  527.00
      Pct.Valid                                   24.11

Calculate the time difference between sign up questionnaire and the beginning of the pandemic

Descriptive Statistics  
dat$time_diff_signup_first_case_uk_jan_31  
N: 2186  

                  time_diff_signup_first_case_uk_jan_31
--------------- ---------------------------------------
           Mean                                   -8.97
        Std.Dev                                    9.09
            Min                                  -34.63
         Median                                   -5.13
            Max                                   -3.80
        N.Valid                                 2186.00
      Pct.Valid                                  100.00

Testing 3, 6, and 9 months before pandemic

[1] 2186

Calculate the time difference between sign up questionnaire and COPING questionnaire

Descriptive Statistics  
dat$time_diff_sign_up_coping  
N: 2186  

                  time_diff_sign_up_coping
--------------- --------------------------
           Mean                       9.37
        Std.Dev                       2.89
            Min                       0.68
         Median                       9.60
            Max                      23.71
        N.Valid                     527.00
      Pct.Valid                      24.11

Proportion of people signed up over one year ago

Proportion of people signed up over half a year ago

#Total score comparison between PHQ, PCL and GAD, prepandemic, retrospecive and baseline PHQ difference scores

    Min.  1st Qu.   Median     Mean  3rd Qu.     Max.     NA's 
-14.0000  -4.0000  -1.0000  -0.6875   3.0000  11.0000     2122 
   Min. 1st Qu.  Median    Mean 3rd Qu.    Max.    NA's 
-17.000   1.000   4.000   3.649   7.000  20.000    1753 

GAD difference scores

    Min.  1st Qu.   Median     Mean  3rd Qu.     Max.     NA's 
-11.0000  -3.0000   0.0000  -0.2381   2.0000  14.0000     2123 
   Min. 1st Qu.  Median    Mean 3rd Qu.    Max.    NA's 
-13.000   0.000   3.000   3.132   6.000  19.000    1771 

PCL difference scores NOTE: Only computed baseline and prepandemic differences as the retro account here isn’t actually retrospective, but whether the reported baseline scores are due to the pandemic.

   Min. 1st Qu.  Median    Mean 3rd Qu.    Max.    NA's 
-18.000  -5.000  -1.000  -1.388   2.000  15.000    1673 
   Min. 1st Qu.  Median    Mean 3rd Qu.    Max.    NA's 
  0.000   0.000   2.000   2.122   3.000   6.000    1948 
Frequencies  
dat$pcl.stressful_experience_repeated_images_retro  
Type: Factor  

              Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
----------- ------ --------- -------------- --------- --------------
         No    321     84.92          84.92     14.68          14.68
        Yes     57     15.08         100.00      2.61          17.29
       <NA>   1808                              82.71         100.00
      Total   2186    100.00         100.00    100.00         100.00
Frequencies  
dat$pcl.stressful_situation_avoiding_activities_retro  
Type: Factor  

              Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
----------- ------ --------- -------------- --------- --------------
         No    248     80.00          80.00     11.34          11.34
        Yes     62     20.00         100.00      2.84          14.18
       <NA>   1876                              85.82         100.00
      Total   2186    100.00         100.00    100.00         100.00
Frequencies  
dat$pcl.feeling_irritable_or_having_angry_outbursts_retro  
Type: Factor  

              Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
----------- ------ --------- -------------- --------- --------------
         No    228     54.68          54.68     10.43          10.43
        Yes    189     45.32         100.00      8.65          19.08
       <NA>   1769                              80.92         100.00
      Total   2186    100.00         100.00    100.00         100.00
Frequencies  
dat$pcl.stressful_experience_upset_reminded_retro  
Type: Factor  

              Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
----------- ------ --------- -------------- --------- --------------
         No    334     80.68          80.68     15.28          15.28
        Yes     80     19.32         100.00      3.66          18.94
       <NA>   1772                              81.06         100.00
      Total   2186    100.00         100.00    100.00         100.00
Frequencies  
dat$pcl.cut_people_feeling_distant_retro  
Type: Factor  

              Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
----------- ------ --------- -------------- --------- --------------
         No    145     31.05          31.05      6.63           6.63
        Yes    322     68.95         100.00     14.73          21.36
       <NA>   1719                              78.64         100.00
      Total   2186    100.00         100.00    100.00         100.00
Frequencies  
dat$pcl.difficulty_concentrating_retro  
Type: Factor  

              Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
----------- ------ --------- -------------- --------- --------------
         No    264     56.77          56.77     12.08          12.08
        Yes    201     43.23         100.00      9.19          21.27
       <NA>   1721                              78.73         100.00
      Total   2186    100.00         100.00    100.00         100.00

OCI-R difference scores

   Min. 1st Qu.  Median    Mean 3rd Qu.    Max.    NA's 
 -36.00  -18.25  -12.00  -15.00  -10.00   -4.00    2172 
   Min. 1st Qu.  Median    Mean 3rd Qu.    Max.    NA's 
-18.000  -9.000  -5.000  -5.524  -2.000  10.000    2104 

#Data level groups Identify which data (prepan, retro and baseline) each participant has.


                 Baseline and retrospective data 
                                               2 
                   Prepandemic and baseline data 
                                              18 
All prepandemic, baseline and retrospective data 
                                              46 

GAD


                 Baseline and retrospective data 
                                               2 
                   Prepandemic and baseline data 
                                              16 
All prepandemic, baseline and retrospective data 
                                              47 

PCL


                           Only prepandemic data 
                                               1 
                 Baseline and retrospective data 
                                               6 
                   Prepandemic and baseline data 
                                             281 
                              Baseline data only 
                                               6 
All prepandemic, baseline and retrospective data 
                                             232 

OCI-R


                           Only prepandemic data 
                                              31 
All prepandemic, baseline and retrospective data 
                                              14 

#Read in respiratory data

GLAD respiratory

Select respiratory variables

EDGI respiratory

  [1] "externalDataReference"                                       
  [2] "startDate"                                                   
  [3] "endDate"                                                     
  [4] "respiratory.unusual_shortness_breath_diarrhoea"              
  [5] "respiratory.date_symptom_experience.txt"                     
  [6] "respiratory.worst_ill_feel"                                  
  [7] "respiratory.chillsfeverhigh_temperature"                     
  [8] "respiratory.persistent_cough"                                
  [9] "respiratory.shortness_of_breath"                             
 [10] "respiratory.body_achemuscle_pain"                            
 [11] "respiratory.sore_throat"                                     
 [12] "respiratory.headache"                                        
 [13] "respiratory.sneezing"                                        
 [14] "respiratory.runny_nose"                                      
 [15] "respiratory.blocked_nose"                                    
 [16] "respiratory.feeling_generally_unwell"                        
 [17] "respiratory.feeling_tiredfatigued"                           
 [18] "respiratory.diarrhoea"                                       
 [19] "respiratory.hoarse_voice"                                    
 [20] "respiratory.unusual_chest_pain_chest"                        
 [21] "respiratory.unusual_abdominal_pain"                          
 [22] "respiratory.feeling_confused_disorientated_drowsy"           
 [23] "respiratory.skipping_meals_because_you_felt_unwell"          
 [24] "respiratory.was_your_persistent_cough_dry_"                  
 [25] "respiratory.was_your_sense_of_smell_impaired"                
 [26] "respiratory.was_your_sense_of_taste_impaired"                
 [27] "respiratory.what_was_the_highest_temperature_you_had"        
 [28] "respiratory.throat_swab_coronavirus_nose"                    
 [29] "respiratory.throat_swab_test_nose"                           
 [30] "respiratory.coronavirus_antibody_test"                       
 [31] "respiratory.results_antibody_test"                           
 [32] "respiratory.paracetamol_panadol_anadin"                      
 [33] "respiratory.ibuprofen_nurofen_brufen_and_calprofen_syrup"    
 [34] "respiratory.aspirin"                                         
 [35] "respiratory.naproxen"                                        
 [36] "respiratory.cold_and_flu_remedies_please_specify"            
 [37] "respiratory.cold_and_flu_remedies_please_specify_text.txt"   
 [38] "respiratory.none_of_these"                                   
 [39] "respiratory.i_called_nhs111"                                 
 [40] "respiratory.i_called_my_gp"                                  
 [41] "respiratory.face_appointment_face"                           
 [42] "respiratory.hospital_accident_attended_emergency"            
 [43] "respiratory.field_hospital_hospital_admitted"                
 [44] "respiratory.none_of_these.1"                                 
 [45] "respiratory.what_dates_were_you_admitted_to_hospital.txt"    
 [46] "respiratory.what_dates_were_you_discharged_from_hospital.txt"
 [47] "respiratory.none"                                            
 [48] "respiratory.fluids_oxygen"                                   
 [49] "respiratory.invasive_ventilation"                            
 [50] "respiratory.invasive_ventilation.1"                          
 [51] "respiratory.have_your_symptoms_gone_awayresolved_now"        
 [52] "respiratory.feel_healthy_date_back.txt"                      
 [53] "respiratory.injury_february_medical_problem"                 
 [54] "respiratory.was_the_illness_or_injury_lifethreatening"       
 [55] "respiratory.admitted_treatment_hospital_injury"              
 [56] "respiratory.injury_result_illness_health"                    
 [57] "respiratory.born_child_birth_defect"                         
 [58] "respiratory.nature_recent_illness_injury.txt"                
 [59] "respiratory.prescribed_regular_medication_february"          
 [60] "respiratory.addition_of_a_new_medication"                    
 [61] "respiratory.stopping_medication_previously_taking"           
 [62] "respiratory.dose_change_medication_previously"               
 [63] "respiratory.medication_packaging_field_blank"                
 [64] "respiratory.medication_packaging_field_blank.1"              
 [65] "respiratory.medication_packaging_field_blank.2"              
 [66] "respiratory.medication_packaging_field_blank.3"              
 [67] "respiratory.medication_packaging_field_blank.4"              
 [68] "respiratory.prescribed_additional_february_medication"       
 [69] "respiratory.medication_packaging_field_blank.5"              
 [70] "respiratory.medication_packaging_field_blank.6"              
 [71] "respiratory.medication_packaging_field_blank.7"              
 [72] "respiratory.medication_packaging_field_blank.8"              
 [73] "respiratory.medication_packaging_field_blank.9"              
 [74] "respiratory.add_discontinued_medication.txt"                 
 [75] "respiratory.stopped_medication_previously_taking"            
 [76] "respiratory.add_discontinued_medication.txt.1"               
 [77] "respiratory.dosing_regimen_record_details"                   
 [78] "respiratory.dosing_regimen_record_details.1"                 
 [79] "respiratory.dosing_regimen_record_details.2"                 
 [80] "respiratory.dosing_regimen_record_details.3"                 
 [81] "respiratory.dosing_regimen_record_details.4"                 
 [82] "respiratory.prescribed_medicines_treatments"                 
 [83] "respiratory.medication_1"                                    
 [84] "respiratory.medication_2"                                    
 [85] "respiratory.medication_3"                                    
 [86] "respiratory.medication_4"                                    
 [87] "respiratory.medication_5"                                    
 [88] "respiratory.medication_6"                                    
 [89] "respiratory.medication_7"                                    
 [90] "respiratory.medication_8"                                    
 [91] "respiratory.medication_9"                                    
 [92] "respiratory.medication_10"                                   
 [93] "respiratory.medication_11"                                   
 [94] "respiratory.medication_12"                                   
 [95] "respiratory.medication_13"                                   
 [96] "respiratory.medication_14"                                   
 [97] "respiratory.medication_15"                                   
 [98] "respiratory.medication_16"                                   
 [99] "respiratory.medication_17"                                   
[100] "respiratory.medication_18"                                   
[101] "respiratory.medication_19"                                   
[102] "respiratory.medication_20"                                   
[103] "respiratory.qqid125062240231choicetextentryvalue21"          
[104] "respiratory.qqid125062240231choicetextentryvalue31"          
[105] "respiratory.qqid125062240231choicetextentryvalue41"          
[106] "respiratory.qqid125062240231choicetextentryvalue51"          
[107] "respiratory.qqid125062240231choicetextentryvalue61"          
[108] "respiratory.qqid125062240231choicetextentryvalue71"          
[109] "respiratory.qqid125062240231choicetextentryvalue81"          
[110] "respiratory.qqid125062240231choicetextentryvalue91"          
[111] "respiratory.qqid125062240231choicetextentryvalue101"         
[112] "respiratory.qqid125062240231choicetextentryvalue111"         
[113] "respiratory.qqid125062240231choicetextentryvalue121"         
[114] "respiratory.qqid125062240231choicetextentryvalue131"         
[115] "respiratory.qqid125062240231choicetextentryvalue141"         
[116] "respiratory.qqid125062240231choicetextentryvalue151"         
[117] "respiratory.qqid125062240231choicetextentryvalue161"         
[118] "respiratory.qqid125062240231choicetextentryvalue171"         
[119] "respiratory.qqid125062240231choicetextentryvalue181"         
[120] "respiratory.qqid125062240231choicetextentryvalue191"         
[121] "respiratory.qqid125062240231choicetextentryvalue201"         
[122] "respiratory.qqid125062240231choicetextentryvalue211"         
[123] "respiratory.qqid125062240231choicetextentryvalue21.1"        
[124] "respiratory.qqid125062240231choicetextentryvalue31.1"        
[125] "respiratory.qqid125062240231choicetextentryvalue41.1"        
[126] "respiratory.qqid125062240231choicetextentryvalue51.1"        
[127] "respiratory.qqid125062240231choicetextentryvalue61.1"        
[128] "respiratory.qqid125062240231choicetextentryvalue71.1"        
[129] "respiratory.qqid125062240231choicetextentryvalue81.1"        
[130] "respiratory.qqid125062240231choicetextentryvalue91.1"        
[131] "respiratory.qqid125062240231choicetextentryvalue101.1"       
[132] "respiratory.qqid125062240231choicetextentryvalue111.1"       
[133] "respiratory.qqid125062240231choicetextentryvalue121.1"       
[134] "respiratory.qqid125062240231choicetextentryvalue131.1"       
[135] "respiratory.qqid125062240231choicetextentryvalue141.1"       
[136] "respiratory.qqid125062240231choicetextentryvalue151.1"       
[137] "respiratory.qqid125062240231choicetextentryvalue161.1"       
[138] "respiratory.qqid125062240231choicetextentryvalue171.1"       
[139] "respiratory.qqid125062240231choicetextentryvalue181.1"       
[140] "respiratory.qqid125062240231choicetextentryvalue191.1"       
[141] "respiratory.qqid125062240231choicetextentryvalue201.1"       
[142] "respiratory.qqid125062240231choicetextentryvalue211.1"       
[143] "respiratory.qqid125062240231choicetextentryvalue21.2"        
[144] "respiratory.qqid125062240231choicetextentryvalue31.2"        
[145] "respiratory.qqid125062240231choicetextentryvalue41.2"        
[146] "respiratory.qqid125062240231choicetextentryvalue51.2"        
[147] "respiratory.qqid125062240231choicetextentryvalue61.2"        
[148] "respiratory.qqid125062240231choicetextentryvalue71.2"        
[149] "respiratory.qqid125062240231choicetextentryvalue81.2"        
[150] "respiratory.qqid125062240231choicetextentryvalue91.2"        
[151] "respiratory.qqid125062240231choicetextentryvalue101.2"       
[152] "respiratory.qqid125062240231choicetextentryvalue111.2"       
[153] "respiratory.qqid125062240231choicetextentryvalue121.2"       
[154] "respiratory.qqid125062240231choicetextentryvalue131.2"       
[155] "respiratory.qqid125062240231choicetextentryvalue141.2"       
[156] "respiratory.qqid125062240231choicetextentryvalue151.2"       
[157] "respiratory.qqid125062240231choicetextentryvalue161.2"       
[158] "respiratory.qqid125062240231choicetextentryvalue171.2"       
[159] "respiratory.qqid125062240231choicetextentryvalue181.2"       
[160] "respiratory.qqid125062240231choicetextentryvalue191.2"       
[161] "respiratory.qqid125062240231choicetextentryvalue201.2"       
[162] "respiratory.qqid125062240231choicetextentryvalue211.2"       
[163] "respiratory.qqid125062240231choicetextentryvalue21.3"        
[164] "respiratory.qqid125062240231choicetextentryvalue31.3"        
[165] "respiratory.qqid125062240231choicetextentryvalue41.3"        
[166] "respiratory.qqid125062240231choicetextentryvalue51.3"        
[167] "respiratory.qqid125062240231choicetextentryvalue61.3"        
[168] "respiratory.qqid125062240231choicetextentryvalue71.3"        
[169] "respiratory.qqid125062240231choicetextentryvalue81.3"        
[170] "respiratory.qqid125062240231choicetextentryvalue91.3"        
[171] "respiratory.qqid125062240231choicetextentryvalue101.3"       
[172] "respiratory.qqid125062240231choicetextentryvalue111.3"       
[173] "respiratory.qqid125062240231choicetextentryvalue121.3"       
[174] "respiratory.qqid125062240231choicetextentryvalue131.3"       
[175] "respiratory.qqid125062240231choicetextentryvalue141.3"       
[176] "respiratory.qqid125062240231choicetextentryvalue151.3"       
[177] "respiratory.qqid125062240231choicetextentryvalue161.3"       
[178] "respiratory.qqid125062240231choicetextentryvalue171.3"       
[179] "respiratory.qqid125062240231choicetextentryvalue181.3"       
[180] "respiratory.qqid125062240231choicetextentryvalue191.3"       
[181] "respiratory.qqid125062240231choicetextentryvalue201.3"       
[182] "respiratory.qqid125062240231choicetextentryvalue211.3"       

Select respiratory variables

[1] 0

NBR respiratory

Select respiratory variables

RAMP respiratory

Select respiratory variables

#Distribution of likert scale COVID-19 symptoms in COPING

Warning: Removed 381 rows containing non-finite values (stat_count).

Warning: Removed 382 rows containing non-finite values (stat_count).

Warning: Removed 381 rows containing non-finite values (stat_count).

#Choosing cut-offs for the likert scale symptoms of “no symptoms”, “mild symptoms”, “moderate symptoms” and “severe symptoms” for the fatigue, persistent cough and skipped meals variables. Coding: 0 = No symptoms 1 = Mild symptoms 2 = Moderate symptoms 3 = Severe symptoms

Results: Persistent cough: “Mild symptoms” as cut off Fatigue: “Severe symptoms” as cut off Skipped meals: “Moderate symptoms” as cut off

[1] 0.3029762
69.70238% 
        1 
[1] 0.08791204
91.2088% 
       3 
[1] 0.192021
80.7979% 
       2 

Creating binary groups for COVID symptoms

Frequencies of binary COVID symptoms

Frequencies  
respiratory.raw.id$respiratory.anosmia_binary  
Type: Numeric  

              Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
----------- ------ --------- -------------- --------- --------------
          0     84     63.16          63.16     15.76          15.76
          1     49     36.84         100.00      9.19          24.95
       <NA>    400                              75.05         100.00
      Total    533    100.00         100.00    100.00         100.00
Frequencies  
respiratory.raw.id$respiratory.pcough_binary  
Type: Numeric  

              Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
----------- ------ --------- -------------- --------- --------------
          0     78     51.32          51.32     14.63          14.63
          1     74     48.68         100.00     13.88          28.52
       <NA>    381                              71.48         100.00
      Total    533    100.00         100.00    100.00         100.00
Frequencies  
respiratory.raw.id$respiratory.fatigue_binary  
Type: Numeric  

              Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
----------- ------ --------- -------------- --------- --------------
          0     87     57.62          57.62     16.32          16.32
          1     64     42.38         100.00     12.01          28.33
       <NA>    382                              71.67         100.00
      Total    533    100.00         100.00    100.00         100.00
Frequencies  
respiratory.raw.id$respiratory.skipped_meals_binary  
Type: Numeric  

              Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
----------- ------ --------- -------------- --------- --------------
          0    103     67.76          67.76     19.32          19.32
          1     49     32.24         100.00      9.19          28.52
       <NA>    381                              71.48         100.00
      Total    533    100.00         100.00    100.00         100.00

Rename respiratory dataset joined to main dataset

Probable COVID-19 case identification

Algorithm from Menni et al. to identify probable COVID-19 Variables required: - Sex: 0 Female, 1 Male - Other binary variables: 0 No, 1 Yes
- “respiratory.anosmia_binary”: loss of smell or taste
- “respiratory.pcough_binary”: Persistent cough - “respiratory.fatigue_binary”: Severe fatigue - “respiratory.skipped_meals_binary”: Skipped meals

The COVID prediction model has coded the sexes opposite to our data set

Sex is no available in the RAMP dataset, therefore a proxy sex variable is created whereby Gender = Male and Transgender = No. 

Age is not available in RAMP, only categorical age. We will assign each individual the middle value of each age category.

Frequencies  
dat.coping$covid_symptoms  
Type: Numeric  

              Freq   % Valid   % Total
----------- ------ --------- ---------
          0   2056     94.05     94.05
          1    130      5.95      5.95
       <NA>      0                0.00
      Total   2186    100.00    100.00
#COVID prediction model
Frequencies  
dat.coping$covid_odds_ratio_50  
Type: Factor  

                       Freq   % Valid   % Total
-------------------- ------ --------- ---------
            No COVID     85     65.38      3.89
      Probable COVID     45     34.62      2.06
                <NA>   2056               94.05
               Total   2186    100.00    100.00

Probable COVID case including the routing question

Frequencies  
dat.coping$covid_probable_case_incl_screening  
Type: Factor  

                       Freq   % Valid   % Total
-------------------- ------ --------- ---------
            No COVID    460     91.09     21.04
      Probable COVID     45      8.91      2.06
                <NA>   1681               76.90
               Total   2186    100.00    100.00

Rename NBR Sample ID

Export data